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Berlin Institute of Health

BIH Core Unit Bioinformatics & BIH HPC IT

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  1. sodar-server Public

    SODAR: System for Omics Data Access and Retrieval

    Python 16 3

  2. sodar-core Public

    SODAR Core: A Django-based framework for building scientific data management web apps

    Python 10 1

  3. scelvis Public

    🎇 SCelVis - web-based visualization of single-cell data. ➡️ ➡️ Demo ➡️➡️

    Python 21 5

  4. digestiflow-server Public

    🍸 Web-based database system for flow cell management (incl. REST API)

    Python 15 3

  5. altamisa Public

    AltamISA: a Python API for ISA-Tab files

    Python 5 2

Repositories

Showing 10 of 178 repositories
  • cubi-tk Public

    CUBI Tooling for SODAR, VarFish et al.

    Python 5 MIT 5 43 2 Updated Apr 25, 2025
  • snappy-pipeline Public

    SNAPPY Nucleic Acid Processing in Python

    Python 10 MIT 4 118 (2 issues need help) 23 Updated Apr 25, 2025
  • sodar-server Public

    SODAR: System for Omics Data Access and Retrieval

    Python 16 MIT 3 338 (6 issues need help) 0 Updated Apr 25, 2025
  • StemCNV-check Public
    R 1 MIT 0 4 0 Updated Apr 25, 2025
  • nf-core-configs Public Forked from nf-core/configs

    Config files used to define parameters specific to compute environments at different Institutions

    Nextflow 0 MIT 307 0 1 Updated Apr 25, 2025
  • dotty Public

    cdot-based transcript projections

    Python 0 MIT 0 2 0 Updated Apr 21, 2025
  • reev Public

    REEV: Explanation and Evaluation of Variants

    TypeScript 9 MIT 4 39 7 Updated Apr 21, 2025
  • bih-cluster Public

    BIH Cluster Wiki

    Awk 16 36 6 (1 issue needs help) 0 Updated Apr 16, 2025
  • sodar-core Public

    SODAR Core: A Django-based framework for building scientific data management web apps

    Python 10 MIT 1 270 (2 issues need help) 0 Updated Apr 14, 2025
  • hpc-access-cli Public
    Python 0 MIT 0 1 6 Updated Apr 8, 2025
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