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@bmds-lab

Biomedical Data Science group

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  1. Crackling Public

    CRISPR, faster, better – The Crackling method for whole-genome target detection

    C++ 11 7

Repositories

Showing 9 of 9 repositories
  • CRISPR_DeepEnsemble Public
    Jupyter Notebook 1 BSD-3-Clause 0 0 0 Updated Feb 24, 2025
  • Crackling-AWS Public
    Python 1 BSD-3-Clause 0 7 0 Updated Jan 9, 2025
  • Crackling-phased Public Forked from bmds-lab/Crackling

    *HaploCrackling* -- The Crackling-based method for variant-aware, whole-genome CRISPR-Cas9 target detection

    C++ 1 BSD-3-Clause 7 0 0 Updated Jul 12, 2024
  • CracklingPlusPlus Public
    C++ 1 BSD-3-Clause 2 0 0 Updated Jun 24, 2024
  • Crackling Public

    CRISPR, faster, better – The Crackling method for whole-genome target detection

    C++ 11 BSD-3-Clause 7 7 6 Updated Jan 11, 2024
  • mm10db Public

    Whole-genome CRISPR target detection, implementing the method described in Sunagawa et al., "Mammalian Reverse Genetics without Crossing Reveals Nr3a as a Short-Sleeper Gene", Cell Reports 14(3)662-677, 2016

    Python 0 BSD-3-Clause 1 0 0 Updated May 7, 2019
  • CRISPR-benchmark Public

    Supplementary data for "A Benchmark of Computational CRISPR-Cas9 Guide Design Methods"

    HTML 0 0 0 0 Updated Apr 18, 2019
  • K562 Public

    Identification of allele-specific CRISPR targets in the K562 cell line.

    Python 0 GPL-3.0 0 0 0 Updated Nov 16, 2018
  • DMI Public

    Algorithm for module identification in biological networks

    Python 1 GPL-3.0 0 0 0 Updated Aug 4, 2018

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