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@compbiocore

Computational Biology Core

Brown University - Center for Computation and Visualization

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  1. bioflows Public

    Bioflows is an easy to use package for running bioinformatics workflows.

    Python 4 3

  2. cbc-documentation-templates Public

    Repository for documentation templates.

    CSS 7 4

  3. jupyterfleet Public

    Cohesive utility to deploy and configure a group of AWS instances running Jupyter for teaching

    Python 1

  4. qckit Public

    Website for qckit, R packages for quality control of genomic sequencing data

    CSS 1

  5. refchef Public

    YAML-based genomics reference management.

    Python 4 2

  6. RSeqAn Public

    SeqAn headers for R

    C++ 3 2

Repositories

Showing 10 of 106 repositories
  • ccv_bootcamp_Reproducibility_R Public
    Jupyter Notebook 0 0 0 0 Updated May 9, 2025
  • cbc_colabfold Public
    Jupyter Notebook 0 0 0 0 Updated Apr 23, 2025
  • cbc-references-refchef Public

    Computational Biology Core List of References for RefChef

    Python 0 GPL-3.0 0 0 1 Updated Apr 9, 2025
  • analysis_template Public template

    Template for analysis repositories

    0 MIT 0 1 0 Updated Dec 20, 2024
  • brodsky_scte Public

    Apply the scTE pipeline to process human cartilage data from Ji et al 2017 and try to identify clusters corresponding to transposable elements, specifically Line1 elements.

    Shell 0 MIT 0 0 0 Updated Nov 12, 2024
  • refchef-test Public
    0 0 0 0 Updated Sep 4, 2024
  • refchef Public

    YAML-based genomics reference management.

    Python 4 GPL-3.0 2 9 0 Updated Aug 27, 2024
  • dennery_reanalysis_2024 Public
    0 MIT 0 0 0 Updated Aug 1, 2024
  • ccv_bootcamp_scrna Public
    HTML 0 MIT 0 0 0 Updated Jul 15, 2024
  • ccv_bootcamp_phylogenetics Public

    Phylogenetics workshop for CCV Bootcamp 2024

    Shell 1 MIT 0 0 0 Updated Jun 14, 2024
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