Integrating Iceberg Table Management into Spark SQL

Iceberg introduces the concept of Table formats (as opposed to File Formats) that defines an access and management model for Tables in Big Data systems. At its core it is a well documented and portable specification of versionable Table metadata (both physical and logical metadata). On top of this it provides a set of capabilities: Snapshot isolation, significant speed and simplicity in access of Table metadata critical for Query Planning overhead( even in the case of datasets with millions of files and partitions), schema evolution, and partition layout isolation( hence the ability to change physical layout without changing Applications).

These capabilities fill some very critical gaps of Table management in Big Data systems, and hence various open source communities have quickly adopted/integrated Iceberg functionality. Iceberg was initially developed at Netflix; subsequently(likely because of its wide appeal) Netflix has graciously incubated it as an Apache project.

It does this by defining clear contracts for underlying file formats such as how schema and statistics from these formats are available to/in Iceberg. It prescribes how Iceberg capabilities can be integrated into existing Big Data scenarios through various packaged components such as iceberg-parquet, iceberg-orc, iceberg-avro for applications that directly manage parquet, orc and avro files. Further iceberg-hive, iceberg-presto and iceberg-spark are packaged jars that can be dropped into scenarios using /hive, presto and spark/ and want to leverage Iceberg to manage datasets.

Apache Spark is rapidly gaining traction as a platform for Enterprise Analytical workloads: for example our Oracle SNAP Spark native OLAP Platform ( see also) is used by a Fortune 10 company to power their Finance Data Lake. These tend to be SQL heavy (in fact almost exclusively SQL based) solutions. It is a time honored tradition to surface analytical and management functionality in SQL, for example as SQL Row and Table functions, or Database options like OLAP and Geospatial capabilities. Data Management is a critical aspect of an Analytical platform, but unfortunately is an underdeveloped component of Apache Spark. This has led customers to come up with their own data management schemes such as using Hive ACID Tables for data management with Spark for query processing, or custom solutions using ETL platforms and tools such as Talend and Airflow. Providing Table management that is seamlessly integrated into familiar SQL verbs such as create table, insert, and select simplifies the task of developing Analytical solutions on Apache Spark and will drive further adoption.

For Apache Spark, Iceberg integration is not fully available for the SQL layer. There is work going on to surface Iceberg Table Management as a V2 Datasource table, but V2 Datasources itself are not fully integrated into Spark SQL ( see also). Given the significant of Apache Spark 2.x we feel it is useful to provide the Table Management for Datasource V1 tables, bringing this functionality to a large deployed base. These reasons led us to develop the ability to use Iceberg Table Management capabilities with Spark SQL, specifically Datasource V1 tables. Our component will:

allow users to create managed tables and define source column to partition column transformations as table options.
have SQL insert statements create new Iceberg Table snapshots
have SQL select~ statements leverage Iceberg Table snapshots for partition and file pruning
provide a new 'as of' clause to the sql select statement to run a query against a particular snapshot of a managed table.
extend Spark SQL with Iceberg management views and statements to view and manage the snapshots of a managed table.

How to use the functionality?

setup spark.sql.extensions= org.apache.spark.sql.iceberg.planning.SparkSessionExtensions
setup classpath via
- spark.executor.extraClassPath + spark.driver.extraClassPath
- OR
- spark.jars

A detailed example

Table creation

Consider the following definition of a store_sales_out table.

create table if not exists store_sales_out
    (
      ss_sold_time_sk           int,
      ss_item_sk                int,
      ss_customer_sk            int,
      ss_cdemo_sk               int,
      ss_hdemo_sk               int,
      ss_addr_sk                int,
      ss_store_sk               int,
      ss_promo_sk               int,
      ss_quantity               int,
      ss_wholesale_cost         decimal(7,2),
      ss_list_price             decimal(7,2),
      ss_sales_price            decimal(7,2),
      ss_ext_sales_price        decimal(7,2),
      ss_sold_month             string,
      ss_sold_day               string,
      ss_sold_date_sk string
    )
    USING parquet
    OPTIONS (
      path "src/test/resources/store_sales",
      addTableManagement "true",
      columnDependencies "ss_sold_date_sk=ss_sold_month:truncate[2],ss_sold_date_sk=ss_sold_day:truncate[4]"
    )
    partitioned by (ss_sold_date_sk)

This is regular Spark datasources v1 table that is partitioned on ss_sold_date_sk. It is defined with two extra options. Setting The addTableManagement to true wil make this a table that will be integrated with the Table management infratstructure from Iceberg. The columnDependencies can be used to defined functional dependencies between table columns in terms of Iceberg Transforms; these will be used for partition and datafile pruning during query planning. More on when we talk about querying.

Assume there is another store_sales table with the same schema that is used to insert/update the store_sales_out table. This entire example is in the BasicCreateAndInsertTest test class. We refer you to this class for the DDL for the store_sales table and other details in this example.

Initially the store_sales_out has no snapshots as can be seen from the output of the showSnapShots invocation in BasicCreateAndInsertTest. We will be providing a snapshots_view shortly, so users will be able to issue a select * from <table_name>$snapshots(this is similar to snap$ views we have in our SNAP product). The table identifier has the form <table_name> followed by the string $snapshots_view. So for store_sales_out you would have to issue a select * from store_sales_out$snapshots_view.

Initially no snapShots:
select * from `store_sales_out$snapshots`
+---+--------+----------+-------------+----------------+--------------------+
|id |parentId|timeMillis|numAddedFiles|numdDeletedFiles|manifestListLocation|
+---+--------+----------+-------------+----------------+--------------------+
+---+--------+----------+-------------+----------------+--------------------+

Insert into store_sales_out without any partition specification.

Let's insert into the store_sales_out table. So we issue

insert into  store_sales_out 
  select  *  from store_sales

This creates a SnapShot with 30 files added. The store_sales table has 6 partitions with 5 files in each partition.

select * from `store_sales_out$snapshots`

+-------------------+--------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+
|id                 |parentId|timeMillis   |numAddedFiles|numdDeletedFiles|manifestListLocation                                                                                                                                |
+-------------------+--------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+
|8311655904283006343|-1      |1566875511640|30           |0               |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-8311655904283006343-1-51cd6794-8cc1-4433-8055-d268dbe62202.avro|
+-------------------+--------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+

The table now has 2109 rows.

select count(*) from store_sales_out;

+--------+
|count(1)|
+--------+
|2109    |
+--------+

Query with ss_sold_date_sk='0906245' has predciate ss_sold_month='09' added

Running a query with a partition filter

select count(*) 
from store_sales_out 
where ss_sold_date_sk='0906245'

We have defined ss_sold_month is related to ss_sold_date_sk via a truncate transformation. So for this query the ss_sold_month='09' is pushed to the TableScan Iceberg operation. This is observed by introspecting the icebergFilter property of the IceTableScanExec physical operator.

The output shows there are 236 rows in this partition.

+--------+
|count(1)|
+--------+
|236     |
+--------+

Issue another Insert into store_sales_out without any partition specification.

Let's issue another insert into the store_sales_out table.

insert into  store_sales_out 
  select  *  from store_sales

This creates another SnapShot with 30 files added.

select * from `store_sales_out$snapshots`

+-------------------+------------------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+
|id                 |parentId          |timeMillis   |numAddedFiles|numdDeletedFiles|manifestListLocation                                                                                                                                |
+-------------------+------------------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+
|369432757121624247 |-1                |1566958072042|30           |0               |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-369432757121624247-1-24288117-f3b9-4f85-aa94-b943cabd844d.avro |
|2542920950855973853|369432757121624247|1566958075214|30           |0               |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-2542920950855973853-1-39abbb75-1022-4ca2-b274-1ea10f445a9b.avro|
+-------------------+------------------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+

The table now has 4218 rows.

select count(*) from store_sales_out;

+--------+
|count(1)|
+--------+
|4218    |
+--------+

Run select as of first insert

If we query the table as of the first insert we still see 2109 rows

as of '2019-09-15 20:32:24.062'
select count(*) from store_sales_out

+--------+
|count(1)|
+--------+
|2109    |
+--------+

Issue an Insert Overwrite into store_sales_out without any partition specification.

Now let's issue a insert overwrite on the store_sales_out table.

insert overwrite table  store_sales_out 
  select  *  from store_sales

This creates a SnapShot with 30 files added and 60 files deleted.


select * from `store_sales_out$snapshots`

+-------------------+-------------------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+
|id                 |parentId           |timeMillis   |numAddedFiles|numdDeletedFiles|manifestListLocation                                                                                                                                |
+-------------------+-------------------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+
|369432757121624247 |-1                 |1566958072042|30           |0               |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-369432757121624247-1-24288117-f3b9-4f85-aa94-b943cabd844d.avro |
|2542920950855973853|369432757121624247 |1566958075214|30           |0               |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-2542920950855973853-1-39abbb75-1022-4ca2-b274-1ea10f445a9b.avro|
|6277089168341855684|2542920950855973853|1566958077282|30           |60              |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-6277089168341855684-1-99eeb5d3-7b1b-4c54-ba3e-2cb1d6946cbe.avro|
+-------------------+-------------------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+

The table again has 2109 rows.

select count(*) from store_sales_out;

+--------+
|count(1)|
+--------+
|2109    |
+--------+

Insert overwrite of 1 partition

Next we insert overwrite 1 partition of store_sales_out

insert overwrite table  store_sales_out partition ( ss_sold_date_sk='0906245' )
  select ss_sold_time_sk,ss_item_sk,ss_customer_sk,ss_cdemo_sk,ss_hdemo_sk,ss_addr_sk,
       ss_store_sk,ss_promo_sk,ss_quantity,ss_wholesale_cost,ss_list_price,ss_sales_price,
       ss_ext_sales_price,ss_sold_month,ss_sold_day from store_sales
  where ss_sold_date_sk='0906245'

This creates a SnapShot with 5 files added and 5 files deleted.


select * from `store_sales_out$snapshots`

+-------------------+-------------------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+
|id                 |parentId           |timeMillis   |numAddedFiles|numdDeletedFiles|manifestListLocation                                                                                                                                |
+-------------------+-------------------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+
|369432757121624247 |-1                 |1566958072042|30           |0               |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-369432757121624247-1-24288117-f3b9-4f85-aa94-b943cabd844d.avro |
|2542920950855973853|369432757121624247 |1566958075214|30           |0               |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-2542920950855973853-1-39abbb75-1022-4ca2-b274-1ea10f445a9b.avro|
|6277089168341855684|2542920950855973853|1566958077282|30           |60              |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-6277089168341855684-1-99eeb5d3-7b1b-4c54-ba3e-2cb1d6946cbe.avro|
|4984732539170247398|6277089168341855684|1566958078575|5            |5               |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-4984732539170247398-1-00a53e56-fd8f-4293-9554-41f2b89ae2d2.avro|
+-------------------+-------------------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+

The table still has 2109 rows.

select count(*) from store_sales_out;

+--------+
|count(1)|
+--------+
|2109    |
+--------+

Insert overwrite of 1 partition with predicates on the source data

We run an insert overwrite on 1 partition again, but now we have an extra predicate on source rows that reduces the number of rows inserted into this partition.

insert overwrite table  store_sales_out partition ( ss_sold_date_sk='0905245' )
  select ss_sold_time_sk,ss_item_sk,ss_customer_sk,ss_cdemo_sk,ss_hdemo_sk,
         ss_addr_sk,ss_store_sk,ss_promo_sk,ss_quantity,ss_wholesale_cost,ss_list_price,
         ss_sales_price,ss_ext_sales_price,ss_sold_month,ss_sold_day from store_sales
  where ss_sold_date_sk='0905245' and ss_item_sk < 5000

This creates a SnapShot with 5 files added and 5 files deleted.


select * from `store_sales_out$snapshots`

+-------------------+-------------------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+
|id                 |parentId           |timeMillis   |numAddedFiles|numdDeletedFiles|manifestListLocation                                                                                                                                |
+-------------------+-------------------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+
|369432757121624247 |-1                 |1566958072042|30           |0               |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-369432757121624247-1-24288117-f3b9-4f85-aa94-b943cabd844d.avro |
|2542920950855973853|369432757121624247 |1566958075214|30           |0               |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-2542920950855973853-1-39abbb75-1022-4ca2-b274-1ea10f445a9b.avro|
|6277089168341855684|2542920950855973853|1566958077282|30           |60              |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-6277089168341855684-1-99eeb5d3-7b1b-4c54-ba3e-2cb1d6946cbe.avro|
|4984732539170247398|6277089168341855684|1566958078575|5            |5               |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-4984732539170247398-1-00a53e56-fd8f-4293-9554-41f2b89ae2d2.avro|
|713868995008319946 |4984732539170247398|1566958079727|5            |5               |/Users/hbutani/sparkline/icebergSQL/src/test/resources/store_sales_out/metadata/snap-713868995008319946-1-2ce5fb56-906d-4a66-a27f-2b5fad668560.avro |
+-------------------+-------------------+-------------+-------------+----------------+----------------------------------------------------------------------------------------------------------------------------------------------------+

But the table count has reduced because of the extra source predciate.

select count(*) from store_sales_out;

+--------+
|count(1)|
+--------+
|1877    |
+--------+

Run select as of first insert

If we can still query the table as of the first insert and we will get 2109 rows

as of '2019-09-15 20:32:24.062'
select count(*) from store_sales_out

+--------+
|count(1)|
+--------+
|2109    |
+--------+

Query the last insrted partition with the invert of the predicate used in the last insert

select * from store_sales_out 
where ss_item_sk > 5000 and ss_sold_date_sk='0905245'

We used the predicate ss_item_sk < 5000 fot the insert and here we use its invert ss_item_sk > 5000 We can validate that this is a NullScan by observing that zero files are scanned by the IceTableScanExec physical operator

Under the covers

See this design note for more details. Note that is out-dated in some of the details, when there are discrepenancies in detailed feature descriptions than this page is more current. But the note still provides a decent picture of how the integration works under the covers.

A SparkSessionExtensions is setup with Planning and Parsing extensions. As explained in the How to use section set the spark.sql.extensions to this so these rules and extensions are in effect in the SparkSessions created in the deployed Spark Context.

Table Creation

The CreateIcebergTableRule checks that tables marked as addTableManagement=true are supported. Currently we require the table to be non-bucketed and partitioned (we plan to relax the partitioning constraint soon); and the table columns must be of Atomic, Map, Array, or Struct type.

The Column Dependencies option

If columnDependencies option is specified then this must be in the form of a comma separated list of column dependence. A 'column dependence' is of the form srcCol=destCol:transformFn, for example date_col=day_col:extract[2] where date_col is a string in the form DD-MM-YYYY. Semantically a column dependence implies that the destCol value can be determined from a srcCol value; the columns are in a one-to-oneormany-to-one` relationship. The src and dest columns can be any column (data or partition columns) of the table.

Currently we support Iceberg Transforms as mapping functions. So users can relate columns based on date or timestamp elements, based on truncating values or value buckets.

During a table scan we will attempt to transform a predicate on the srcCol into a predicate on the destCol. For example date_col='09-12-2019' will be transformed into day_col='09' and applied. If the destCol is a partition column this can lead to partition pruning. For example if the table is partitioned by day_col then from a predicate date_col='09-12-2019' the inferred predicate day_col='09' will lead to only partitions from the 9th day of each month to be scanned. In case the destCol is a data column the inferred predicate can lead to datafiles being pruned based on the statistics available on the column.

Inserting into a snapshot managed table

Spark Insert Plans involve 3 major components: the InsertHadoopFsRelation Spark Command, the FileFormat Writer and the File Commit Protocol. Table metadata information(up to the granularity of table partitions) is retrieved and updated from the Spark Catalog, whereas File information and interaction is done via the File System API.

InsertHadoopFsRelation: orchestrates the entire operation, it also handles interaction with the Spark Catalog. It's logic executes in the Driver of the SparkContext. The actions it performs are: compute the affected partitions based on the /partition specification/ in the Insert statement, setup the File Commit Protocol and the Write Job that is associated with the File Format Writer, execute and commit/abort the job, compute the set of Added and Deleted partitions, and update the Spark Catalog.
File Commit Protocol: tracks changes to data files made by the job and provides rudimentary level of job isolation. It provides a set of callbacks like new Task file, Task commit/abort and Job commit/abort that the other components use to notify it of file changes. On commit it moves files into their final locations, after which other operations will see the new list of the Table files.
Write Tasks: create and write new Files, notify the File Commit Protocol of new files.

See Figure: Spark Insert Command execution in the design for a detail sequence diagram of how a insert is executed. For snapshot managed tables we replace the ~~InsertHadoopFsRelation~~ Command with an ~~Insert Into IcebergTable~~ command.

Insert Into IcebergTable command

This a drop-in replacement for InsertIntoHadoopFsRelationCommand setup by the ~~IcebergTableWriteRule~~. By and large follows the same execution flow as ~~InsertIntoHadoopFsRelation~~ Command with the following behavior overrides.

The write must be on a CatalogTable. So catalogTable parameter is not optional.
Since this is a iceberg managed table we load the IceTable metadata for this table.
initialMatchingPartitions is computed from the IceTable metadata
since data files must be managed by iceberg custom partition locations cannot be configured for this table.
an IcebergFileCommitProtocol is setup that wraps the underlying FileCommitProtocol. This mostly defers to the underlying commitProtocol instance; in the process it ensures iceberg DataFile instances are created for new files on task commit which are then delivered to the Driver IcebergFileCommitProtocol instance via TaskCommitMessages.
The underlying FileCommitProtocol is setup with dynamicPartitionOverwrite mode set to false. Since IceTable metadata is used by scan operations to compute what files to scan we don't have to do an all-or-nothing replacement of files in a partition that is needed for dynamic partition mode using the FileCommitProtocol.
in case of dynamicPartitionOverwrite mode we don't clear specified source Partitions, because we want the current files to be able execute queries against older snapshots.
once the job finishes the Catalog is updated with 'new' and 'deleted' partitions just as it is in a regular InsertIntoHadoopFsRelationCommand
then based on the 'initial set' of DataFile and the set of DataFile created by tasks of this job a new iceberg Snapshot is created.
finally cache invalidation and stats update actions happen just like in a regular InsertIntoHadoopFsRelationCommand.

Iceberg File Commit Protocol

Provides the following function on top of the 'normal' Commit Protocol. Commit actions are simply deferred to the 'designate' except in the following:

track files created for each Task in a TaskPaths instance. This tracks the temporary file location and also the location that the file will be moved to on a commit.
on Task Commit build an Iceberg DataFile instance. Currently only if the file is a parquet file we will also build column level stats.
- The TaskCommitMessage we send back has a payload of IcebergTaskCommitMessage, which encapsulates the TaskCommitMessage build by the 'designate' and the DataFile instances.
we ignore deleteWithJob invocations, as we want to keep historical files around. These will be removed via a clear snapshot command.
on a commitJob we extract all the DataFile instances from the IcebergTaskCommitMessage messages and expose a addedDataFiles list which is used by IceTableScanExec to build the new Iceberg Table Snapshot.

Scanning a snapshot managed table

This is handled by a ~~Iceberg Table Scan~~ physical operator. This is setup as a parent Physical Operator of a [[FileSourceScanExec]]. During execution before handing over control to its child [[FileSourceScanExec]] operator it updates its selectedPartitions member.

This is computed based on the partitionFilters and dataFilters associated with this scan. These are converted to an [[IceExpression]], further [[IceExpression]] are added based on column dependencies defined for this table. From the current Iceberg snaphot a list of [[DataFile]] are computed. Finally the [[FileSourceScanExec]] list of selected partitions list is updated to remove files from [[PartitionDirectory]] instances not in this list of DataFiles.

License

hbutani/icebergSQL

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