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@ikmb

Institute of Clinical Molecular Biology

Popular repositories Loading

  1. MAGScoT MAGScoT Public

    MAGScoT - a MAG scoring and refinement tool

    R 34 2

  2. eagleimp eagleimp Public

    C++ 25 4

  3. amino_acid_encoding_deep_learning_applications amino_acid_encoding_deep_learning_applications Public

    The repository contains all the code for the paper amino acid encoding using deep learning application

    Python 21 5

  4. vcf2prot vcf2prot Public

    Accelerate the generation of personalized proteomes from a Variant calling format (VCF) file and a reference proteome using graphical processing units (GPUs).

    Rust 18 1

  5. TOFU-MAaPO TOFU-MAaPO Public

    Nextflow pipeline for the analysis of metagenomic short reads.

    Nextflow 12 5

  6. gwas-assoc gwas-assoc Public

    The IKMB GWAS Association Testing Pipeline

    Python 9 1

Repositories

Showing 10 of 69 repositories
  • catch-all Public

    Data management resources for the clinical research unit catch-all.

    Python 0 GPL-3.0 0 0 0 Updated Apr 9, 2025
  • TOFU-MAaPO Public

    Nextflow pipeline for the analysis of metagenomic short reads.

    Nextflow 12 GPL-3.0 5 0 1 Updated Apr 9, 2025
  • eagleimp Public
    C++ 25 GPL-3.0 4 1 0 Updated Apr 8, 2025
  • bloodAGENT Public
    C++ 0 BSD-2-Clause 0 0 0 Updated Apr 3, 2025
  • ngs-qc Public

    QC tools for new sequencing runs (FastQC, FastQ Screen, MultiQC Report)

    Nextflow 0 GPL-3.0 1 0 0 Updated Apr 1, 2025
  • vcffilter Public
    C++ 0 GPL-3.0 0 0 0 Updated Mar 26, 2025
  • TOFUpaper Public
    Shell 0 0 0 0 Updated Mar 24, 2025
  • phewas-assoc Public

    The IKMB Association Testing Pipeline for PheWAS

    Python 1 GPL-3.0 0 0 0 Updated Mar 20, 2025
  • hybridgwais Public

    Fast epistasis screening software using hardware accelerators (incl. FPGA and GPU)

    C++ 3 GPL-3.0 1 0 0 Updated Mar 14, 2025
  • Jupyter Notebook 1 MIT 1 0 0 Updated Mar 13, 2025

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