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jassk8/README.md

Hello World, I am Jason! 💻

I am a Computational Biologist at the Institute of Medical Statistics and Computational Biology at the University of Cologne. I love modeling complex systems to drive scientific discovery! Currently, I am a member of the CompBio work group:



My Research and Projects

My research focuses on the quantification of the RNA life cycle. In this context, I am the main developer of the software tool 'Halfpipe', which quantifies RNA half-lives.



In addition, I have developed a simulation framework called RNAmetabol that can be used for experimental design of RNA metabolism experiments with 4sU labeling.



Highlight Publications

[1] Müller et al. (2025) Halfpipe: a tool for analyzing metabolic labeling RNA-seq data to quantify RNA half-lives. NAR Genomics and Bioinformatics.

[2] Müller et al. (2024) Nuclear export is a limiting factor in eukaryotic mRNA metabolism. PLOS Computational Biology.

Pinned Loading

  1. IMSBCompBio/Halfpipe Public

    A tool for the quantification of RNA half-lives

    Python 1 1

  2. RNAmetabol Public

    Simulating a two-compartment model of RNA metabolism

    Python