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@khanlab

Khan Computational Imaging Lab

  • 15 followers
  • Robarts Research Institute, Western University, London, Canada

Popular repositories Loading

  1. hippunfold hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 58 18

  2. snakebids snakebids Public

    Snakemake + BIDS

    Python 19 15

  3. tar2bids tar2bids Public

    Python 7 9

  4. neuroglia-helpers neuroglia-helpers Public

    Helper and wrapper scripts for using Singularity locally and on compute canada

    Shell 5 7

  5. autobids autobids Public archive

    Automated Dicom to BIDS and pipelines using compute canada

    Shell 5 4

  6. bids-tutorial bids-tutorial Public

    Tutorial on BIDS - Methods Lunch Feb 12

    5

Repositories

Showing 10 of 118 repositories
  • hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 58 MIT 18 30 (1 issue needs help) 4 Updated May 16, 2025
  • SPIMprep Public

    A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

    Python 3 MIT 1 9 (4 issues need help) 2 Updated May 16, 2025
  • zarrnii Public

    Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

    Jupyter Notebook 2 1 1 0 Updated May 16, 2025
  • khanlab.github.io Public

    Khan Lab website

    HTML 2 11 1 3 Updated May 6, 2025
  • scattr Public

    BIDS app for structural connectivity between targeted regions

    Python 4 MIT 5 5 (1 issue needs help) 1 Updated May 2, 2025
  • actions Public

    Centralized repo of reusable GH actions

    0 2 0 2 Updated Apr 25, 2025
  • wiki Public
    Ruby 0 MIT 2 2 0 Updated Apr 23, 2025
  • hippunfold-atlases Public

    Surface-based atlases for hippunfold v2.x

    0 0 0 0 Updated Apr 22, 2025
  • gcnn_dmri Public
    Python 1 MIT 0 0 1 Updated Apr 1, 2025
  • example-snakemake Public Forked from tkkuehn/example-snakemake

    Snakemake tutorial, to be adapted for Brainhack 2025

    Python 0 2 0 0 Updated Mar 27, 2025
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