Skip to content
@monarch-initiative

Monarch Initiative

Cross-species disease discovery and diagnosis

Pinned Loading

  1. mondo mondo Public template

    Mondo Disease Ontology

    Jupyter Notebook 258 58

  2. koza koza Public

    Data transformation framework for LinkML data models

    Python 53 5

  3. MAxO MAxO Public

    Medical action ontology

    HTML 59 4

  4. helpdesk helpdesk Public

    The Monarch Initiative Helpdesk

    7

  5. monarch-ingest monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    Python 17 3

  6. monarch-app monarch-app Public

    Monarch Initiative website and API

    Vue 27 7

Repositories

Showing 10 of 256 repositories
  • aurelian Public

    A motley crew of agents developed by the Monarch Initiative

    monarch-initiative/aurelian’s past year of commit activity
    Python 17 MIT 2 27 (1 issue needs help) 3 Updated Jun 29, 2025
  • mondo Public template

    Mondo Disease Ontology

    monarch-initiative/mondo’s past year of commit activity
    Jupyter Notebook 258 CC-BY-4.0 58 383 (2 issues need help) 63 Updated Jun 29, 2025
  • upheno-cross-species-ingest Public
    monarch-initiative/upheno-cross-species-ingest’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jun 28, 2025
  • medgen Public

    MedGen ingest.

    monarch-initiative/medgen’s past year of commit activity
    Python 1 0 9 0 Updated Jun 28, 2025
  • monarch-app Public

    Monarch Initiative website and API

    monarch-initiative/monarch-app’s past year of commit activity
    Vue 27 BSD-3-Clause 7 257 (3 issues need help) 13 Updated Jun 29, 2025
  • monarch-documentation Public

    Technical documentation for all Monarch applications, packages, services and related projects.

    monarch-initiative/monarch-documentation’s past year of commit activity
    Python 7 GPL-3.0 0 24 0 Updated Jun 27, 2025
  • phenopacket-store-toolkit Public

    Toolkit for accessing, Q/C, and maintenance of Phenopacket Store

    monarch-initiative/phenopacket-store-toolkit’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 1 Updated Jun 27, 2025
  • monarch-ingest Public

    Data ingest application for Monarch Initiative knowledge graph using Koza

    monarch-initiative/monarch-ingest’s past year of commit activity
    Python 17 BSD-3-Clause 3 35 9 Updated Jun 26, 2025
  • ontogpt Public

    LLM-based ontological extraction tools, including SPIRES

    monarch-initiative/ontogpt’s past year of commit activity
    Jupyter Notebook 702 BSD-3-Clause 97 67 10 Updated Jun 26, 2025
  • community-annotation Public

    A data repository for capturing and curating disease annotation records

    monarch-initiative/community-annotation’s past year of commit activity
    0 BSD-3-Clause 0 0 0 Updated Jun 26, 2025
View all repositories