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Pull requests: nf-core/modules

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173 Open 6,230 Closed
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Pull requests list

Fix logic for gVCF vs. VCF
#8726 opened Jun 27, 2025 by lvclark Loading…
Migrate fusionreport/download module new module Adding a new module
#8725 opened Jun 27, 2025 by delfiterradas Loading…
17 tasks done
1
@delfiterradas
Update oras to https
#8724 opened Jun 27, 2025 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
Add module cooltools/seigscis
#8721 opened Jun 26, 2025 by Thibault-Poinsignon Loading…
11 of 13 tasks
New module: KMA (based on https://github.com/nf-core/modules/pull/7251) new module Adding a new module
#8718 opened Jun 26, 2025 by HaidYi Loading…
11 of 16 tasks
1
@HaidYi
downgrade multiqc version to accommodate ARM
#8717 opened Jun 25, 2025 by tobsecret Loading…
2 tasks done
4
Adding cnaqc tool module
#8714 opened Jun 25, 2025 by vvvirgy Loading…
17 tasks
1
update varlociraptor/callvariants to only use scenarios
#8711 opened Jun 25, 2025 by famosab Loading…
17 tasks
Add scanpy/filter module awaiting-changes will be closed after 30 days new module Adding a new module
#8704 opened Jun 24, 2025 by nictru Loading…
9
Add scanpy/highlyvariablegenes
#8703 opened Jun 24, 2025 by nictru Loading…
Add scanpy/pca module
#8702 opened Jun 24, 2025 by nictru Loading…
New module: sigprofiler awaiting-changes will be closed after 30 days new module Adding a new module
#8698 opened Jun 24, 2025 by Katerina10-cloud Loading…
17 tasks
@Katerina10-cloud
16
New module: ctree
#8696 opened Jun 24, 2025 by elena-buscaroli Loading…
9 of 17 tasks
1
New module: taxonkit/list
#8680 opened Jun 19, 2025 by jcbioinformatics Loading…
13 of 14 tasks
New module: picard/splitsambynumberofreads new module Adding a new module Ready for Review
#8679 opened Jun 19, 2025 by Y-Pei Loading…
12 of 13 tasks
1
@Y-Pei
14
upload pyclonevi module
#8677 opened Jun 19, 2025 by giorgiagandolfi Loading…
17 tasks
1
2
split the fastq and fastq_idx outputs from cellranger mkfastq module
#8673 opened Jun 19, 2025 by gordond88 Loading…
1 of 5 tasks
1
Add module blast/tblastx
#8672 opened Jun 19, 2025 by snehaag006 Loading…
1
Mixcr
#8665 opened Jun 17, 2025 by derrik-gratz Loading…
14 tasks done
Bff
#8653 opened Jun 17, 2025 by LuisHeinzlmeier Loading…
25
Vizgenpostprocessing/runsegmentationontile
#8652 opened Jun 17, 2025 by mcmero Loading…
12 of 17 tasks
1
@mcmero
10
New module: hashsolo new module Adding a new module
#8639 opened Jun 15, 2025 by seohyonkim • Draft
12 tasks done
1
4
new module: Souporcell new module Adding a new module
#8636 opened Jun 14, 2025 by seohyonkim • Draft
12 tasks done
1
2
add readgroup to fq2bam gpu module uses GPU
#8624 opened Jun 11, 2025 by famosab • Draft
17 tasks
8
Share conda across test
#8621 opened Jun 10, 2025 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
9
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