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88 Open 141 Closed
88 Open 141 Closed
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Issues list

Coloring by AnnData in render_labels is insanely slow bug Something isn't working labels 🏷️ Anything related to Labels
#469 opened May 25, 2025 by timtreis
1
Logger should mention from which function it's triggered enhancement New feature or request 🗣️ discussion Needs further discussion
#468 opened May 24, 2025 by timtreis
1
No warning when the manually specified table doesn't actually annotate the labels element enhancement New feature or request labels 🏷️ Anything related to Labels
#467 opened May 24, 2025 by timtreis
1
Bug in pl.render_shapes which does not let you specify palette and groups
#464 opened May 18, 2025 by sophiamaedler
Adding plotting specific documentation documentation Improvements or additions to documentation spatialproteomics
#463 opened May 13, 2025 by LucaMarconato
Ability to change color of the border of labels spatialproteomics
#462 opened May 13, 2025 by LucaMarconato
1
Color leak when outline_alpha=1 and full_alpha=0 spatialproteomics
#461 opened May 13, 2025 by LucaMarconato
1
Document how to perform on-the-fly normalization for channels. spatialproteomics
#460 opened May 13, 2025 by LucaMarconato
1
Showing legend by defaults and allowing richer customizability spatialproteomics
#459 opened May 13, 2025 by LucaMarconato
1
If existent, xyz_colors column in adata.obs should be used.
#457 opened May 9, 2025 by timtreis
Plotting Leiden clusters, coloring by cell cycle phase, throws KeyError: 'geometry'
#455 opened May 9, 2025 by marcouderzo
pl.render_labels can not color cell type annotation
#453 opened May 7, 2025 by liuyang2006
1
Feature: PCA aggregation for n >= 4 channels in render_images
#450 opened Apr 22, 2025 by timtreis
1
Feature: datashader also for images enhancement New feature or request
#449 opened Apr 21, 2025 by LucaMarconato
1
Unintuitive almost white color when plotting with datashader
#445 opened Apr 16, 2025 by LucaMarconato
render_shapes() with color argument fails on Merfish data
#441 opened Apr 7, 2025 by ConstensouxAlexis
render_shapes() fails to accept custom color palette but not when cropped to a certain size
#439 opened Apr 1, 2025 by HansLambda
1
Multiple colorbars on global coordinate system
#431 opened Mar 19, 2025 by StevenWijnen
Handling Annotations from QuPath
#430 opened Mar 18, 2025 by rushin682
Render shapes fails for categoricals of different length across coordinate systems bug Something isn't working priority: medium shapes 🫧 Anything related to Shapes
#425 opened Feb 21, 2025 by Marius1311
Plotting cluster sometimes results in coordinate system not being found, even if set correctly
#420 opened Feb 7, 2025 by marcouderzo
1
norm doesn't have impact for single image channel rendering when clip=False
#418 opened Feb 4, 2025 by Sonja-Stockhaus
@Sonja-Stockhaus
Clipping warning when plotting images spatialproteomics
#416 opened Jan 30, 2025 by LucaMarconato
2
Performance issue when plotting spatialdata object with many samples
#415 opened Jan 29, 2025 by grst
2
Plot categorical color when colors are provided via .uns
#414 opened Jan 28, 2025 by ArneDefauw
1
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