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@sourmash-bio

sourmash, for large-scale biological sequence search!

Quickly search, compare, and analyze genomic and metagenomic data sets.

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  1. sourmash Public

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    Python 491 80

  2. branchwater Public

    Searching large collections of sequencing data with genome-scale queries

    Rust 11 3

  3. wort Public

    A database for signatures of public genomic sources

    Python 18 2

  4. sourmash_plugin_branchwater Public

    fast, multithreaded sourmash operations: search, compare, and gather.

    Python 22 5

  5. database-examples Public

    Example workflows and useful scripts for building your own sourmash databases

    Python 2

  6. sourmash-mixers Public

    A meta-package to install a number of sourmash plugins!

    4

Repositories

Showing 10 of 40 repositories
  • Rust 3 BSD-3-Clause 1 26 11 Updated Mar 24, 2025
  • sourmash Public

    Quickly search, compare, and analyze genomic and metagenomic data sets.

    Python 491 80 720 (4 issues need help) 63 Updated Mar 23, 2025
  • sourmash_plugin_tables Public

    Tables is a python-based sourmash plugin to convert the standard output files from base sourmash into an OTU format. See README for more information.

    Python 0 BSD-3-Clause 0 1 0 Updated Mar 20, 2025
  • branchwater Public

    Searching large collections of sequencing data with genome-scale queries

    Rust 11 3 26 5 Updated Mar 17, 2025
  • sourmash_plugin_branchwater Public

    fast, multithreaded sourmash operations: search, compare, and gather.

    Python 22 AGPL-3.0 5 103 24 Updated Mar 17, 2025
  • 2024-benchmark-gather Public

    Benchmarking code for various gather implementations

    Jupyter Notebook 0 0 0 0 Updated Mar 9, 2025
  • wort Public

    A database for signatures of public genomic sources

    Python 18 2 23 2 Updated Mar 6, 2025
  • 2025-sourmash-ncbi-viral-databases Public

    Build infrastructure for creating sourmash databases from NCBI for all viruses

    Python 0 BSD-3-Clause 0 0 0 Updated Feb 25, 2025
  • sourmash_plugin_betterplot Public

    Improved plotting/viz and cluster examination for sourmash

    Python 2 BSD-3-Clause 0 22 1 Updated Feb 15, 2025
  • 2025-sourmash-databases-doc-template Public

    Template structure for building new sourmash database doc files

    Python 0 BSD-3-Clause 0 1 0 Updated Feb 1, 2025

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