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@theiagen

Theiagen Genomics

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  1. public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    WDL 48 18

  2. public_health_viral_genomics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, especially SARS-CoV-2

    WDL 41 17

  3. public_health_bacterial_genomics Public

    WDL 26 14

Repositories

Showing 10 of 39 repositories
  • public_health_bioinformatics Public

    Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of pathogens of public health concern.

    WDL 48 GPL-3.0 18 44 8 Updated Mar 21, 2025
  • theiaphylo Public

    A collection of python-based phylogenetic analysis and comparison tools

    Python 0 GPL-3.0 0 0 0 Updated Mar 21, 2025
  • RefNAAP-wdl Public

    WDL wrapper around https://github.com/jiangweiyao/RefNAAP

    HTML 0 0 2 0 Updated Mar 21, 2025
  • theiagen_docker_builds Public
    Dockerfile 3 0 1 1 Updated Mar 21, 2025
  • Mid-Atlantic-Docker4PH-2025 Public

    Resource for Mid-Atlantic's Docker for Public Health Bioinformatics 2025 Training Event

    Dockerfile 0 0 0 1 Updated Mar 21, 2025
  • tbp-parser Public

    A TBProfiler output parser used to classify the severity of Mycobacterium tuberculosis mutations.

    Python 5 GPL-3.0 0 0 0 Updated Mar 19, 2025
  • theiavalidate Public

    A Python tool to compare the contents of two tab-delimited files.

    Python 2 GPL-3.0 1 3 1 Updated Mar 18, 2025
  • utilities Public

    A collection of general utility scripts

    Python 1 AGPL-3.0 0 0 1 Updated Mar 17, 2025
  • OHDL-AR-wdl Public

    OHDL_AR Workflow wrapped in WDL

    WDL 1 0 0 0 Updated Mar 17, 2025
  • Northeast-SDP4PHB-2025 Public

    About Resource for Northeast's Software Development Practices for Public Health Bioinformatics 2025 Training Event

    Nextflow 1 GPL-3.0 1 0 11 Updated Mar 17, 2025
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