Python library to facilitate genome assembly, annotation, and comparative genomics

Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

Viral genomics analysis pipelines

KubeGene - A turn-key Genome Sequencing workflow management framework

DNA sequencing analysis notes from Ming Tang

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

A modern genomics framework for julia

H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)

Bioinformatics on GCP, AWS or Azure

Pan-genomic sequence analysis

A collection of publications on comparison of high-throughput sequencing technologies.

TREDPARSE: HLI Short Tandem Repeat (STR) caller

Allele-specific copy number estimation with whole genome sequencing

Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data

FQSqueezer - FASTQ compressor based on k-mer statistics

ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads

This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.

Extensible full DAG streaming computation server with services and jobs for RNA-Seq, Tn-Seq, WG-Seq and Term-Seq.

A dotplot application for DNA/RNA sequence