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  1. vg Public

    tools for working with genome variation graphs

    C++ 1.2k 202

  2. libbdsg Public

    Optimized sequence graph implementations for graph genomics

    C++ 34 5

  3. libhandlegraph Public

    Library for the Handle Graph abstraction

    C++ 23 6

  4. toil-vg Public

    Distributed and cloud computing framework for vg

    Python 23 14

Repositories

Showing 10 of 54 repositories
  • long-read-giraffe-experiments Public

    Experimental materials for testing the long-read mapping abilities of vg giraffe

    Python 4 0 19 0 Updated Mar 26, 2025
  • vg Public

    tools for working with genome variation graphs

    C++ 1,172 202 842 (9 issues need help) 6 Updated Mar 26, 2025
  • sequenceTubeMap Public

    displays multiple genomic sequences in the form of a tube map

    JavaScript 192 MIT 27 85 (2 issues need help) 9 Updated Mar 25, 2025
  • vg_wdl Public

    Workflow Description Language (WDL) scripts for common vg workflows

    WDL 20 MIT 10 12 2 Updated Mar 25, 2025
  • libvgio Public

    A dynamic library that provides io for the vg toolkit.

    C++ 8 7 6 1 Updated Mar 20, 2025
  • vcflib Public Forked from vcflib/vcflib

    a simple C++ library for parsing and manipulating VCF files, + many command-line utilities

    C++ 1 MIT 223 0 1 Updated Mar 18, 2025
  • libhandlegraph Public

    Library for the Handle Graph abstraction

    C++ 23 MIT 6 15 3 Updated Mar 11, 2025
  • sdsl-lite Public Forked from simongog/sdsl-lite

    Succinct Data Structure Library 2.0

    C++ 9 358 0 0 Updated Jan 26, 2025
  • libbdsg Public

    Optimized sequence graph implementations for graph genomics

    C++ 34 MIT 5 23 7 Updated Dec 18, 2024
  • libbdsg-easy Public

    Easy installation for libbdsg

    Makefile 0 2 0 0 Updated Nov 22, 2024
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