Molecular interactions inference from single-cell multi-omics data

Context specific and dynamic gene regulatory network reconstruction and analysis

scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction

Single-Cell Inference of Class Switch Recombination

Deconvolution of spatial transcriptomics data based on Deep Learning

Omics Analysis

30 days of Python programming challenge is a step-by-step guide to learn the Python programming language in 30 days. This challenge may take more than100 days, follow your own pace. These videos ma…

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

R package for detecting doublets in single-cell RNA sequencing data

Interfaces for HDF5-based Single Cell File Formats

A tutorial for pathway visualization using tidyverse, igraph, and ggraph

FlowUtils is a Python package containing various utility functions related to flow cytometry analysis, primarily focused on compensation and transformation tasks commonly used within the flow commu…

A Python library for reading and writing Flow Cytometry Standard (FCS) files

A deep learning architecture for robust inference and accurate prediction of cellular dynamics

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

scripts and notebooks from sanbomics

Interactively analyze single cell genomic data

Single cell analysis of donor livers pre- and post machine perfusion

GPUmatrix: An R package for algebra using GPU

Run GPT model on the browser with WebGPU. An implementation of GPT inference in less than ~1500 lines of vanilla Javascript.

Pythonic tool for orchestrating machine-learning/high performance/quantum-computing workflows in heterogeneous compute environments.

Pipeline to fetch metadata and raw FastQ files from public databases

SingleCellNet: classify single cells across species and platforms

Reference-guided transcript discovery and quantification for long read RNA-Seq data