Accurate Prediction of Genome-wide RNA Secondary Structure Based on Extreme Gradient Boosting

The complete sequence of a human genome

A Tiny WebGL helper Library

A JavaScript framework for interactive 3D and 2D visualizations

The repo is to host the scripts and the results of multiple RBPs.

CLIP Tool Kit (CTK)

Small utilities for working with fastq sequence files.

Repository

CWL workflows and tools for the miRNA-Seq workflow

Toolkit to train base-resolution deep neural networks on functional genomics data and to interpret them

🍒 Cherry Studio is a desktop client that supports for multiple LLM providers.

Additional analysis on SpliceBERT

Primary RNA sequence model

Process m6A/MeRIP-seq data in a single or batch job mode

Jupyter notebook based genomic data visualization toolkit.

Feature-rich Python implementation of the tximport package for gene count estimation.

chimeric eCLIP processing pipeline

This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length …

A Machine Learning Model to Predict Phase Separation Driving Residues

New computational framework to process and analyze KAS-seq and spKAS-seq data.

m5C mapping and site calling pipeline.

Ultrafast GPU-enabled QTL mapper

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

Fast and accurate DNASeq Variant Calling workflow composed of LUSH-toolkits

A deep learning-based tool to identify splice variants

A curated list of awesome Bioinformatics libraries and software.

Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets

a framework for training sequence-level deep learning networks

Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.