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@10XGenomics

10x Genomics

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  1. cellranger Public

    10x Genomics Single Cell Analysis

    Rust 390 95

  2. loupeR Public

    Convert Seurat objects to 10x Genomics Loupe files.

    R 114 15

  3. spaceranger Public

    Rust 1

Repositories

Showing 10 of 71 repositories
  • orbit Public

    Rust wrapper for STAR aligner

    C 17 MIT 3 0 5 Updated Mar 26, 2025
  • bamtofastq Public

    Convert 10x BAM files to the original FASTQs compatible with 10x pipelines

    Rust 62 MIT 7 17 13 Updated Mar 25, 2025
  • rules_conda Public

    Bazel rules for creating conda environments

    Go 5 MIT 1 3 2 Updated Mar 24, 2025
  • rkm Public Forked from genbattle/rkm

    Generic k-means implementation written in Rust

    Rust 0 9 0 0 Updated Mar 20, 2025
  • HumanColonCancer_VisiumHD Public

    Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using high definition spatial profiling"

    R 54 3 0 0 Updated Mar 19, 2025
  • analysis_guides Public

    10x Genomics analysis guides files

    Jupyter Notebook 8 10 1 0 Updated Mar 14, 2025
  • rust-shardio Public

    Out-of-memory sorting of large datasets map / reduce style processing

    Rust 47 MIT 4 3 3 Updated Mar 10, 2025
  • enclone Public

    VDJ Clonotyping & Analysis Tools

    Rust 48 14 4 0 Updated Mar 7, 2025
  • spaceranger Public
    Rust 1 0 1 1 Updated Mar 7, 2025
  • image-analysis-rs Public
    Rust 0 0 0 1 Updated Mar 7, 2025
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