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@NIGMS

National Institute of General Medical Sciences

Increasing our understanding of biological processes and lays the foundation for advances in disease diagnosis, treatment, and prevention.

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  1. NIGMS-Sandbox NIGMS-Sandbox Public

    Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH

    Shell 69 17

  2. DNA-Methylation-Sequencing-Analysis-with-WGBS DNA-Methylation-Sequencing-Analysis-with-WGBS Public

    Jupyter Notebook 12 3

  3. Introduction-to-Data-Science-for-Biology Introduction-to-Data-Science-for-Biology Public

    Python-based machine learning and data science module from SFSU developed for the NIGMS Sandbox project

    Jupyter Notebook 7 6

  4. ATAC-Seq-and-Single-Cell-ATAC-Seq-Analysis ATAC-Seq-and-Single-Cell-ATAC-Seq-Analysis Public

    ATAC-seq and scATAC-seq module developed by the University of Nebraska Medical Center

    Jupyter Notebook 7 5

  5. Integrating-Multi-Omics-Datasets Integrating-Multi-Omics-Datasets Public

    Multi-omics module that includes RNAseq, Epigenetics, and integrated multi-omics analyses developed as part of the NIGMS Sandbox project

    HTML 6 2

  6. Metagenomics-Analysis-of-Biofilm-Microbiome Metagenomics-Analysis-of-Biofilm-Microbiome Public

    Jupyter Notebook 6 4

Repositories

Showing 10 of 22 repositories
  • NIGMS-Sandbox Public

    Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH

    Shell 69 17 0 1 Updated Mar 28, 2025
  • Jupyter Notebook 6 GPL-3.0 4 0 0 Updated Mar 27, 2025
  • Consensus-Pathway-Analysis-in-the-Cloud Public

    Consensus pathway analysis module developed by the University of Nevada at Reno

    HTML 1 3 0 1 Updated Mar 25, 2025
  • Analysis-of-Biomedical-Data-for-Biomarker-Discovery Public

    R-based module that uses machine learning in biomarker discovery

    HTML 1 6 0 2 Updated Mar 24, 2025
  • Integrating-Multi-Omics-Datasets Public

    Multi-omics module that includes RNAseq, Epigenetics, and integrated multi-omics analyses developed as part of the NIGMS Sandbox project

    HTML 6 2 0 0 Updated Mar 21, 2025
  • Jupyter Notebook 12 3 0 0 Updated Mar 13, 2025
  • RNA-Seq-Differential-Expression-Analysis Public

    RNAseq workflow run using Snakemake on Google Cloud Platform, developed as part of the NIH NIGMS Sandbox

    Jupyter Notebook 3 2 0 0 Updated Mar 13, 2025
  • Introduction-to-Data-Science-for-Biology Public

    Python-based machine learning and data science module from SFSU developed for the NIGMS Sandbox project

    Jupyter Notebook 7 6 0 0 Updated Mar 5, 2025
  • Proteome-Quantification Public

    Secondary analysis of Proteomics data in R, developed by the University of Arkansas for Medical Sciences for the NIH NIGMS Sandbox project.

    Jupyter Notebook 0 5 0 0 Updated Mar 4, 2025
  • Biomedical-Imaging-Analysis-using-AI-ML-Approaches Public

    Machine Learning module for cloud-based analyses developed as part of the NIGMS Sandbox Project

    Jupyter Notebook 5 4 0 0 Updated Mar 3, 2025

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