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  1. ascets ascets Public

    This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted aver…

    R 15 1

  2. BISCUT-py3 BISCUT-py3 Public

    Python 11 5

  3. GaTSV GaTSV Public

    R 8

  4. SVsig SVsig Public

    MATLAB 2 1

  5. GATK_CN_CWL GATK_CN_CWL Public

    Implementation of the GATK copy number pipeline in CWL (ported from WDL)

    Common Workflow Language 1

  6. oncoprint-template oncoprint-template Public

    Template Code for OncoPrint

    R

Repositories

Showing 10 of 17 repositories
  • pomt_manuscript_code Public
    0 0 0 0 Updated Mar 23, 2025
  • GaTSV Public
    R 8 GPL-2.0 0 0 0 Updated Mar 18, 2025
  • hcmi_sv_consensus_public Public
    Python 0 0 0 0 Updated Jan 30, 2025
  • hcmi_copy_number_consensus Public
    Python 0 0 0 0 Updated Jan 30, 2025
  • crispr_seq_deconvolution Public
    Python 0 0 0 0 Updated Dec 24, 2024
  • TangentXY Public

    An extension of the Tangent method that allows for improved normalization of the sex chromosomes.

    R 0 0 0 0 Updated Oct 14, 2024
  • SVsig Public
    MATLAB 2 AGPL-3.0 1 0 0 Updated Jul 22, 2024
  • TangentXY_scripts Public
    R 0 0 0 0 Updated Jul 15, 2024
  • gatk4-data-processing Public Forked from gatk-workflows/gatk4-data-processing

    Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

    WDL 0 BSD-3-Clause 77 0 0 Updated Jun 7, 2024
  • BISCUT-py3 Public
    Python 11 5 3 1 Updated Apr 25, 2024
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