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@calacademy-research

California Academy of Sciences, Institute for Biodiversity Science & Sustainability

Public repositories for IBSS projects

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  1. minibar minibar Public

    Dual barcode and primer demultiplexing for MinION sequenced reads

    Python 38 5

  2. antcat antcat Public

    World Catalog of Ants

    Ruby 19 9

  3. RAxML_Astral_trees RAxML_Astral_trees Public

    This project generates Astral-III species trees from gene trees generated from RAxML using UCE data generated by the Phyluce pipeline. Then runs an Astral III analysis.

    Shell 8 2

  4. BLATq BLATq Public

    blatq is a modified version of BLAT—The BLAST-Like Alignment Tool to allow direct use of fastq files

    C 4 1

  5. antweb antweb Public

    AntWeb is the world's largest online database of images, specimen records, and natural history information on ants. It is community driven and open to contribution from anyone with specimen records…

    Java 4 1

  6. COMB COMB Public

    C O M B

    R 4 4

Repositories

Showing 10 of 57 repositories
  • TypeScript 1 1 0 0 Updated Mar 27, 2025
  • load_analyzer Public
    Python 1 GPL-3.0 1 0 0 Updated Mar 27, 2025
  • bels_dockerized Public Forked from VertNet/bels

    Biodiversity Enhanced Location Services

    Python 0 Apache-2.0 2 0 0 Updated Mar 26, 2025
  • cas-web-asset-server Public Forked from specify/web-asset-server

    Sample attachment server implementation for Specify.

    Python 2 15 0 0 Updated Mar 25, 2025
  • antcat Public

    World Catalog of Ants

    Ruby 19 9 0 4 Updated Mar 23, 2025
  • Python 0 0 0 0 Updated Mar 18, 2025
  • Jupyter Notebook 0 1 0 1 Updated Mar 17, 2025
  • picturae_csv_parser Public

    stand alone program , used to QC csvs ready for specify import from picturae, nfn and digileap supplied data

    Python 1 0 0 0 Updated Mar 14, 2025
  • web-asset-importer Public

    Image client used in conjunction with web-asset-server to process images/data into image server, and specify databases.

    Python 1 0 0 0 Updated Mar 12, 2025
  • explorer-core Public

    Collections explorer core with API

    Python 4 GPL-3.0 0 0 0 Updated Mar 5, 2025

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