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  1. powerbacgwas Public

    PowerBacGWAS: Power calculations for Bacterial GWAS

    Python 13

  2. amr_efm_wgs Public

    ARIBA-based pipeline for genotypic prediction of AMR from whole-genome sequences of Enterococcus faecium

    Python 6

  3. mrsa_snp_cut-off Public

    R

  4. phylogenetic_clustering Public

    Script to perform phylogenetic partitioning/clustering

    R

  5. scripts Public

    variety of different bioinformatic scripts

    Python

  6. staph-adaptive-mutations Public

    Python 2 1