Zarr backend for DelayedArray objects

Find/fix old serialized S4 instances

Low-level utilities to retrieve data from the UCSC Genome Browser

Perform pairwise sequence alignments

Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them

Foundation of external vector representation and manipulation in Bioconductor

A set of tools for making TxDb objects from genomic annotations from various sources (e.g. UCSC, Ensembl, and GFF files)

Foundation of array-like containers in Bioconductor

High-performance sparse data representation and manipulation in R

Software infrastructure for efficient representation of full genomes and their SNPs

Representation and manipulation of short genomic alignments

HDF5 datasets as array-like objects in R

Defines many S4 generic functions used in Bioconductor

S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects

HTSlib high-throughput sequencing library as an R package

Foundation of vector-like and list-like containers in Bioconductor

Foundation of integer range manipulation in Bioconductor

A unified framework for working transparently with on-disk and in-memory array-like datasets

Query the gene models of a given organism/assembly

A container (S4 class) for matrix-like assays

Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

Efficient manipulation of biological strings

Representation and manipulation of genomic intervals

Forge your own BSgenome data package