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ImageJ

Open source scientific multidimensional image processing

ImageJ is open source software for processing and analyzing scientific images.

ImageJ is the original desktop application which has been in development since 1997.

ImageJ2 is a new version of ImageJ targeting scientific multidimensional image data.

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  1. ImageJ Public

    Public domain software for processing and analyzing scientific images

    Java 630 233

  2. imagej2 Public

    Open scientific N-dimensional image processing 🔬 🎇

    Java 1.2k 335

  3. example-legacy-plugin Public template

    Simple Maven project for an ImageJ 1.x plugin

    Java 34 41

  4. example-imagej2-command Public template

    Simple Maven project for an ImageJ2 command

    Java 30 18

  5. imagej.github.io Public

    The ImageJ wiki

    JavaScript 27 126

  6. tutorials Public

    ImageJ2 programming examples

    Jupyter Notebook 184 117

Repositories

Showing 10 of 84 repositories
  • imagej-ui-swing Public

    ImageJ UI for Java Swing.

    Java 10 BSD-2-Clause 20 32 3 Updated Apr 8, 2025
  • imagej-updater Public

    The automatic updater for ImageJ

    Java 12 15 55 5 Updated Apr 8, 2025
  • pyimagej Public

    Use ImageJ from Python

    Python 497 86 49 5 Updated Apr 8, 2025
  • imagej.github.io Public

    The ImageJ wiki

    JavaScript 27 126 63 (1 issue needs help) 3 Updated Apr 4, 2025
  • list-of-update-sites Public

    The update sites ImageJ2 knows about automatically

    Python 6 94 1 1 Updated Apr 1, 2025
  • napari-imagej Public

    Use ImageJ functionality from napari

    Python 29 BSD-2-Clause 5 38 0 Updated Mar 31, 2025
  • ImageJ Public

    Public domain software for processing and analyzing scientific images

    Java 630 233 70 7 Updated Mar 19, 2025
  • ij1-patcher Public

    Extension points for ImageJ via runtime patching to support (limited) headless operation and ImageJ2's legacy layer

    Java 5 BSD-2-Clause 6 8 0 Updated Mar 17, 2025
  • imagej-legacy Public

    ImageJ+ImageJ2 compatibility layer

    Java 17 BSD-2-Clause 26 97 (1 issue needs help) 15 Updated Mar 17, 2025
  • imagej-matlab Public

    MATLAB integration with ImageJ data structures and runtime.

    Java 14 BSD-2-Clause 6 15 0 Updated Feb 4, 2025

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