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Types with default field values, keyword constructors and (un-)pack macros

Julia 421 32 Updated Aug 24, 2023
Python 35 4 Updated Mar 19, 2025

Energetic modelling of Amyloid beta nucleation

Jupyter Notebook 1 1 Updated Feb 17, 2025

A collaborative note taking, wiki and documentation platform that scales. Built with Django and React. Opensource alternative to Notion or Outline.

Python 8,938 195 Updated Mar 21, 2025

Compute neighbor lists for atomistic systems

Python 49 5 Updated Mar 5, 2025

OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.

C 6,647 1,537 Updated Mar 15, 2025
Python 5 2 Updated Mar 17, 2025

Polynomial manipulations in Julia

Julia 309 75 Updated Mar 3, 2025

Kuhlman Lab Installation of AlphaFold3

Python 23 2 Updated Jan 2, 2025

Host-guest structures for binding free energy benchmarks

Python 5 1 Updated Sep 2, 2023

Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning

Python 306 54 Updated Mar 21, 2025

Genome modeling and design across all domains of life

Jupyter Notebook 2,563 254 Updated Mar 20, 2025

Basic plotting recipes for trees

Julia 8 1 Updated Mar 15, 2025

Converts an xyz file to an RDKit mol object

Python 262 70 Updated Jan 22, 2025

A Julia interface to the SQLite library

Julia 227 81 Updated May 22, 2024

SIMD instructions for faster distance calculations.

C++ 12 6 Updated Feb 9, 2025

manage different types of processes using declarative syntax

Julia 7 Updated Dec 25, 2024

A simple index type that allows for inverted selections

Julia 83 9 Updated Dec 11, 2024

Metal programming in Julia

Julia 396 43 Updated Mar 21, 2025

🔬 Path to a free self-taught education in Bioinformatics!

5,869 980 Updated Apr 8, 2024

Constant pH simulation with OpenMM

Python 7 Updated Mar 20, 2025

A Julia package for computational (bio)mechanics and computational design

Julia 38 8 Updated Mar 21, 2025

HPC setup for juliaup, julia and HPC key packages requiring system libraries

Shell 58 3 Updated Oct 25, 2024

Visualising AtomsBase-compatible structures

Julia 6 3 Updated Nov 21, 2024

Sample codes for my book on molecular dynamics simulation

Jupyter Notebook 216 55 Updated Feb 4, 2025

Plugin for OpenMM providing simulation data wrappers as DLPack data structures

C++ 4 4 Updated Oct 9, 2024

Easily and efficiently memoize any function, closure, or callable object in Julia.

Julia 106 2 Updated Nov 14, 2024

Coarse-grain MD not fast enough? Try some Cahill inspired MembraneElectrostatics!

Julia 1 Updated Feb 20, 2025
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