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@khanlab

Khan Computational Imaging Lab

  • 15 followers
  • Robarts Research Institute, Western University, London, Canada

Popular repositories Loading

  1. hippunfold hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 57 18

  2. snakebids snakebids Public

    Snakemake + BIDS

    Python 19 15

  3. tar2bids tar2bids Public

    Python 7 9

  4. neuroglia-helpers neuroglia-helpers Public

    Helper and wrapper scripts for using Singularity locally and on compute canada

    Shell 5 7

  5. autobids autobids Public archive

    Automated Dicom to BIDS and pipelines using compute canada

    Shell 5 4

  6. bids-tutorial bids-tutorial Public

    Tutorial on BIDS - Methods Lunch Feb 12

    5

Repositories

Showing 10 of 118 repositories
  • hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 57 MIT 18 33 (2 issues need help) 5 Updated Apr 23, 2025
  • wiki Public
    Ruby 0 MIT 2 2 0 Updated Apr 23, 2025
  • hippunfold-atlases Public

    Surface-based atlases for hippunfold v2.x

    0 0 0 0 Updated Apr 22, 2025
  • SPIMprep Public

    A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

    Python 3 MIT 1 9 (4 issues need help) 2 Updated Apr 7, 2025
  • khanlab.github.io Public

    Khan Lab website

    HTML 2 10 1 2 Updated Apr 1, 2025
  • gcnn_dmri Public
    Python 1 MIT 0 0 1 Updated Apr 1, 2025
  • example-snakemake Public Forked from tkkuehn/example-snakemake

    Snakemake tutorial, to be adapted for Brainhack 2025

    Python 0 2 0 0 Updated Mar 27, 2025
  • LOBE_analysis Public

    Snakemake workflow for LOBE study

    Jupyter Notebook 0 0 0 0 Updated Mar 20, 2025
  • SPIMquant Public

    SnakeBIDS app for quantitative analysis of SPIM (lightsheet) brain data

    Jupyter Notebook 1 1 2 1 Updated Mar 19, 2025
  • snakebids Public

    Snakemake + BIDS

    Python 19 MIT 15 21 7 Updated Mar 18, 2025
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bids mri python