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Meren Lab

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  1. anvio Public

    An analysis and visualization platform for 'omics data

    Python 460 146

  2. oligotyping Public

    Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

    Python 39 22

  3. illumina-utils Public

    A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

    Python 91 31

Repositories

Showing 10 of 22 repositories
  • anvio Public

    An analysis and visualization platform for 'omics data

    Python 460 GPL-3.0 146 163 15 Updated Apr 2, 2025
  • anvio.org Public

    The anvi'o community web page

    HTML 4 12 2 1 Updated Mar 24, 2025
  • merenlab.org Public

    Web content for Meren Lab

    HTML 11 MIT 31 2 0 Updated Mar 24, 2025
  • rosalind Public

    A simple Meren Lab bot to notify our Slack regarding our jobs on the HPC System ROSA at UOL

    Python 0 0 0 0 Updated Mar 16, 2025
  • clusterize Public Forked from ekiefl/clusterize

    The most basic SLURM wrapper

    Python 0 MIT 1 0 0 Updated Feb 4, 2025
  • reads-for-assembly Public

    Simulate metagenomic short reads from one or more populations.

    Python 26 GPL-2.0 4 0 0 Updated Jan 29, 2025
  • public-marine-omics-metadata Public

    Semi-curated metadata for marine metagenomes (and other 'omics data types)

    R 1 0 4 0 Updated Sep 18, 2024
  • oligotyping Public

    Exploring microbial patterns through subtle nucleotide variation within 16S rRNA gene tag sequences of closely related taxa

    Python 39 GPL-2.0 22 5 0 Updated Jun 24, 2024
  • illumina-utils Public

    A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).

    Python 91 GPL-2.0 31 7 1 Updated Dec 16, 2023
  • world-map-r Public

    A simple script to display stuff on a world map with R and ggplot

    R 17 GPL-3.0 4 1 0 Updated Sep 15, 2023
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