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@nfdi4plants

DataPLANT

Services and infrastructures to support #FAIRData science and good data management practices within the plant basic research community. #NFDI.

Hi there 👋 We are DataPLANT

Our mission: Driving the digital change in plant science

DataPLANT’s mission is to provide a sustainable and well annotated data management platform for plant sciences. DataPLANT will pave the way from classical paper publication to pure data publication including the Annotated Research Context (ARC)

The community

DataPlant is primarily geared towards the needs of fundamental plant research (e.g. those represented by the DFG categories 202-[01 evolution and systematics of plants and animals, 04 plant physiology, 05 plant biochemistry and biophysics, 06 plant cell and developmental biology, 07 plant genetics]. As such DataPlant is especially adapter to large scale data sets be it omics science or imaging and is ready to store petabaytes of annotated data.

The Annotated Research Context (ARC)

DataPlant will allow users to store their data in form of an annotated research context. This includes not only the measurement data, but also (meta)data annotations, tools, and scripts. This will allow reproducibility plus to forward “raw data” and metadata slices to public repositories (e.g. EBI NCBI etc.).

More info at https://www.nfdi4plants.org/

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  1. ARCitect Public

    Cross-platform app to create and manage ARCs.

    Vue 9 7

  2. DataHUB Public

    This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

    Shell 3 3

  3. ARC-specification Public

    15 13

  4. Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    F# 37 7

  5. ARCtrl Public

    Polyglot (.NET/JS/Python) library for management of Annotated Research Contexts (ARCs) using an in-memory representation and runtime-agnostic contract systems.

    F# 17 8

  6. dataplan Public

    DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT

    JavaScript 7 10

Repositories

Showing 10 of 85 repositories
  • 15 13 20 1 Updated Mar 24, 2025
  • 0 MIT 0 14 0 Updated Mar 24, 2025
  • arcmanager_frontend Public

    Web-based application for creating and managing your ARCs directly on the DataHUB.

    Vue 0 AGPL-3.0 0 1 0 Updated Mar 24, 2025
  • dataplan Public

    DataPLAN is a Data Management Plan (DMP) generator developed by DataPLANT

    JavaScript 7 GPL-3.0 10 4 0 Updated Mar 24, 2025
  • Swate Public

    Excel Add-In for annotation of experimental data and computational workflows.

    F# 37 MIT 7 20 1 Updated Mar 24, 2025
  • arc-export Public

    Containerized CLI tool for exporting ARCs to other formats such as ISA-JSON or RO-Crate

    F# 3 MIT 0 1 8 Updated Mar 24, 2025
  • arc-validate Public

    Home of all the tools and libraries to create and run validation of ARCs

    F# 4 MIT 2 17 10 Updated Mar 21, 2025
  • DataHUB Public

    This repository may be used to collect issues, bugs or similar regarding the DataPLANT DataHUB.

    Shell 3 MIT 3 22 0 Updated Mar 21, 2025
  • training-material Public

    Training material of DataPLANT workshops and classes

    HTML 0 CC-BY-4.0 4 1 1 Updated Mar 21, 2025
  • elab2arc Public

    A prototype to convert eLabFTW experiments to ARC assays

    HTML 0 2 3 0 Updated Mar 20, 2025

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