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@oxfordmmm

Oxford MMM

Modernising Medical Microbiology

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  1. CompassCompact CompassCompact Public

    A compact version of Oxford Compass (Complete Pathogen Analysis Software Solution)

    Python 7 3

  2. tuberculosis_amr_catalogues tuberculosis_amr_catalogues Public

    Python 5

  3. gumpy gumpy Public

    Genetics with numpy

    Python 4 1

  4. gnomonicus gnomonicus Public

    Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants

    Python 4

  5. ncov2019-artic-nf ncov2019-artic-nf Public

    Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Nextflow 3 2

  6. FN5 FN5 Public

    SNP matrix generation with caching to disk to allow fast reloading

    C++ 3 1

Repositories

Showing 10 of 48 repositories
  • dorado_basecalling_from_f5s Public

    Basecalling using Dorado: f5s to fqs

    Nextflow 0 MIT 1 0 0 Updated Mar 21, 2025
  • Python 5 0 0 0 Updated Mar 13, 2025
  • FN5 Public

    SNP matrix generation with caching to disk to allow fast reloading

    C++ 3 1 0 0 Updated Feb 19, 2025
  • gnomonicus Public

    Python code to integrate results of tb-pipeline and provide an antibiogram, mutations and variants

    Python 4 0 1 0 Updated Feb 19, 2025
  • piezo Public
    Python 2 0 2 0 Updated Feb 7, 2025
  • parse-who-tb-catalogue-v2 Public

    Parse the WHO TB AMR catalogue into GARC for use with gnomonicus

    Python 0 0 0 0 Updated Jan 29, 2025
  • grumpy Public

    Re-implementation of gumpy in rust for speed

    Rust 2 0 0 0 Updated Dec 19, 2024
  • labbox_backend Public

    The backend files for the LabBox application

    Python 0 MIT 0 0 0 Updated Nov 3, 2024
  • labbox_frontend Public

    The front-end for the LabBox application

    TypeScript 0 MIT 0 0 0 Updated Sep 9, 2024
  • HTML 0 MIT 0 0 0 Updated Aug 21, 2024

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