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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. qiime2 Public

    Official repository for the QIIME 2 framework.

    Python 496 243

  2. distributions Public

    Makefile 1 5

  3. q2cli Public

    Command line interface for QIIME 2

    Python 19 25

  4. docs Public

    Python 21 58

Repositories

Showing 10 of 78 repositories
  • q2view Public

    A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

    TypeScript 1 BSD-3-Clause 1 4 2 Updated Apr 3, 2025
  • q2-alignment Public

    Support for multiple sequence alignment in QIIME 2.

    Jupyter Notebook 2 BSD-3-Clause 22 7 1 Updated Apr 3, 2025
  • Python 6 BSD-3-Clause 27 7 1 Updated Apr 3, 2025
  • q2-quality-control Public

    A QIIME 2 plugin for quality control of sequence and feature data

    Python 4 BSD-3-Clause 17 8 2 Updated Apr 3, 2025
  • q2-fmt Public

    q2-fmt is an all-in-one suite for assessing engraftment extent following Fecal Microbiota Transplants!

    Python 4 BSD-3-Clause 11 7 1 Updated Apr 3, 2025
  • library Public

    A website for sharing QIIME 2 Plugins

    Svelte 0 BSD-3-Clause 1 2 0 Updated Apr 3, 2025
  • qiime2 Public

    Official repository for the QIIME 2 framework.

    Python 496 BSD-3-Clause 243 67 (5 issues need help) 7 Updated Apr 1, 2025
  • distributions Public
    Makefile 1 BSD-3-Clause 5 4 1 Updated Apr 1, 2025
  • q2cli Public

    Command line interface for QIIME 2

    Python 19 BSD-3-Clause 25 14 2 Updated Apr 1, 2025
  • amplicon-docs Public

    Source for QIIME 2 amplicon documentation.

    Makefile 0 0 5 0 Updated Apr 1, 2025