satijalab / seurat
R toolkit for single cell genomics
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R toolkit for single cell genomics
R's data.table package extends data.frame:
R for data science: a book
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Fast, sensitive and accurate integration of single-cell data with Harmony
📊 A universal enrichment tool for interpreting omics data
Simple Features for R
Accurate sample inference from amplicon data with single nucleotide resolution
Make Complex Heatmaps
'ggplot2' Based Publication Ready Plots
An implementation of the Grammar of Graphics in R
R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Mastering Shiny: a book
Inferring CNV from Single-Cell RNA-Seq