This package contains the original 2012 AlexNet code.

Modelling protein conformational landscape with Alphafold

Analyzed files for the structure prediction of CPs with proline residues

A software tool for the processing and interpretation of ligand-protein interaction dataset acquired by PELSA

Fragment binding prediction with ColabFold

Awesome Protein Representation Learning

A collection of research papers for AI-based protein design

PyTorch Implementation of CLEAN-Contact: Contrastive Learning-enabled Enzyme Functional Annotation Prediction with Structural Inference

Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and relies on a tailored scalable transformer architecture.

Fully local web research and report writing assistant

An AI-powered research assistant that performs iterative, deep research on any topic by combining search engines, web scraping, and large language models. The goal of this repo is to provide the si…

A centralized location for storing curated data from cBioPortal

Homomer symmetry prediction from protein sequence

A Protein Large Language Model for Multi-Task Protein Language Processing

An open source deep research clone. AI Agent that reasons large amounts of web data extracted with Firecrawl

Construct database and identify metabolites.

Machine learning models for MS2 spectra scans

🚀 Winner of the Donnelly Centre Innovation and Commercialization award: Apply diffusion models to deconvolute highly multiplexed DIA-MS/MS data by conditioning on MS1 signals to generate cleaner MS…

The official code repository of "Multi-purpose enzyme-substrate interaction prediction with progressive conditional deep learning"

Feature extraction from .pdb files

⚡ TabPFN: Foundation Model for Tabular Data ⚡