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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 15

  2. baton baton Public

    iRODS client programs and API

    C 19 19

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 10 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 9 14

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 6 3

  6. npg_qc npg_qc Public

    QC checks and metrics for Illumina NGS data

    Perl 6 18

Repositories

Showing 10 of 84 repositories
  • npg_irods Public

    Tools for managing HTS (BAM and CRAM) format files in iRODS.

    Perl 2 GPL-3.0 17 17 2 Updated Apr 23, 2025
  • partisan Public

    A Python client API for iRODS

    Python 1 GPL-3.0 4 0 0 Updated Apr 22, 2025
  • npg-irods-python Public

    Applications for the management of data and metadata in iRODS

    Python 1 GPL-3.0 9 1 1 Updated Apr 22, 2025
  • npg-python-lib Public

    A library of Python functions and classes common to NPG applications

    Python 0 GPL-3.0 1 0 0 Updated Apr 22, 2025
  • npg_notifications Public
    Python 0 4 2 4 Updated Apr 17, 2025
  • npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 10 17 23 7 Updated Apr 17, 2025
  • perl-irods-wrap Public

    Perl iRODS Client Wrapper Library

    Perl 4 20 12 0 Updated Apr 17, 2025
  • p4 Public

    Process and Pipe Pipeline Panacea

    Perl 3 14 9 7 Updated Apr 17, 2025
  • npg_porch Public
    Python 2 GPL-3.0 4 10 0 Updated Apr 17, 2025
  • nanoplexer Public Forked from hanyue36/nanoplexer

    Tool for demultiplexing Nanopore barcode sequence data

    C 0 MIT 4 0 0 Updated Apr 17, 2025
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