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  1. samtools samtools Public

    Tools (written in C using htslib) for manipulating next-generation sequencing data

    C 1.7k 597

  2. htslib htslib Public

    C library for high-throughput sequencing data formats

    C 857 455

  3. bcftools bcftools Public

    This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

    C 776 249

  4. hts-specs hts-specs Public

    Specifications of SAM/BAM and related high-throughput sequencing file formats

    TeX 680 178

  5. htsjdk htsjdk Public

    A Java API for high-throughput sequencing data (HTS) formats.

    Java 285 243

  6. tabix tabix Public archive

    Note: tabix and bgzip binaries are now part of the HTSlib project.

    C 91 40

Repositories

Showing 10 of 15 repositories
  • htscodecs Public

    Custom compression for CRAM and others.

    C 34 21 0 0 Updated Jul 3, 2025
  • htslib Public

    C library for high-throughput sequencing data formats

    C 857 455 137 24 Updated Jul 3, 2025
  • bcftools Public

    This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

    C 776 249 315 11 Updated Jun 30, 2025
  • samtools Public

    Tools (written in C using htslib) for manipulating next-generation sequencing data

    C 1,744 597 169 18 Updated Jun 26, 2025
  • hts-specs Public

    Specifications of SAM/BAM and related high-throughput sequencing file formats

    TeX 680 178 179 34 Updated Jun 18, 2025
  • htsjdk Public

    A Java API for high-throughput sequencing data (HTS) formats.

    Java 285 243 268 43 Updated Jun 9, 2025
  • HTML 8 12 3 0 Updated May 30, 2025
  • c-maint Public

    Maintenance scripts used with the htslib/samtools/bcftools repositories

    Perl 3 3 0 1 Updated May 22, 2025
  • htslib-crypt4gh Public

    HTSlib crypt4gh plug-in

    C 3 2 1 0 Updated Sep 22, 2023
  • klib Public Forked from attractivechaos/klib

    A standalone and lightweight C library

    C 0 MIT 634 0 0 Updated Jan 17, 2023