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paftools.js prints errors to stdout rather than stderr

Status: Open.

#1305 In lh3/minimap2;

· diekhans opened on Jun 20, 2025

Minimap2 crashes for Wheat Scaffolding

Status: Open.

#1303 In lh3/minimap2;

· neupanebpn63 opened on Jun 9, 2025

Enhancements for paired-end short-read RNAseq alignment

feature-request

Status: Open.

#1297 In lh3/minimap2;

· JosephLalli opened on May 5, 2025

Query about Micro-C data usage

Status: Open.

#1295 In lh3/minimap2;

· NMaziak opened on Apr 23, 2025

1.9 TB is insufficient memory for whole genome alignment between two 5 GB genomes.

Status: Open.

#1272 In lh3/minimap2;

· altuffin opened on Jan 22, 2025

split reference genome alignment would be in consistence with aligning it as a whole?

split-prefix

Status: Open.

#1270 In lh3/minimap2;

· Alipha-Clisa opened on Jan 13, 2025

Mappy on MacOS arm_neon.h error

help wanted

Status: Open.

#1235 In lh3/minimap2;

· christopher-vollmers opened on Aug 15, 2024

Question about different mappings of same read

more info needed

Status: Open.

#1200 In lh3/minimap2;

· nadjano opened on Apr 24, 2024

Mappy segfault with long sequence and MD=True

bug

Status: Open.

#1183 In lh3/minimap2;

· davidnewman02 opened on Mar 25, 2024

Chaining score contributions from anchors seem to be capped by the anchor length, but the paper doesn't explain why

question

Status: Open.

#1125 In lh3/minimap2;

· adamnovak opened on Oct 24, 2023

Order of operations in CIGAR

enhancement

Status: Open.

#1118 In lh3/minimap2;

· baraaorabi opened on Sep 27, 2023

Single base exon in splice alignment

Status: Open.

#1099 In lh3/minimap2;

· baraaorabi opened on Aug 8, 2023