Can't get IRKernel to work

[tlcaputi]

Prerequisites

• Have you checked the solutions in our troubleshooting guide for common problems ?
• Have you checked that your issue isn't already filed ?

Description

I can't get Hydrogen to run any R code within Atom. The code is there, I hit Shift+Enter, and it just advances to the next line without running anything. Occasionally (but not always), it will give this error:

[IPKernelApp] ERROR | Invalid Message Traceback (most recent call last): 
File "C:\Users\tcapu\Anaconda3\lib\site-packages\ipykernel\kernelbase.py", line 234, in dispatch_shell msg = self.session.deserialize(msg, content=True, copy=False) 
File "C:\Users\tcapu\Anaconda3\lib\site-packages\jupyter_client\session.py", line 923, in deserialize raise ValueError("Invalid Signature: %r" % signature) 
ValueError: 
Invalid Signature: b'2544794458c882815449de78afb2b3b48930a5d51683dba538f268232250374b'

Steps to Reproduce

1. Install Anaconda3.7, Atom 1.39.1, and Hydrogen
2. Run IRkernel::installspec() in R
3. Attempt to run any R code in Atom

Versions

OS version:
Windows 10

atom --version

Atom    : 1.40.0
Electron: 3.1.10
Chrome  : 66.0.3359.181
Node    : 10.2.0

apm --version

apm  2.4.2
npm  6.2.0
node 10.2.1 x64
atom 1.40.0
python 3.6.8
git 2.22.0.windows.1
visual studio

Hydrogen version:

Hydrogen
├── 2.10.3
├── https://github.com/nteract/hydrogen
├── Run code interactively, inspect data, and plot. All the power of Jupyter kernels, inside your favorite text editor.
├── 1195831 downloads
└── 654 stars

Plugins

Have you installed and activated any of the Hydrogen plugins below ?

• hydrogen-python
• Hydrogen Launcher
• Data Explorer

Logs

Expected behavior

Run R code

Screenshots

[If applicable, add screenshots to help explain your problem.]

Additional context

[Add any other context about the problem here.]

[wadethestealth]

From the nteract.io docs to install IRKernel:

install.packages(c('repr', 'IRdisplay', 'evaluate', 'crayon', 'pbdZMQ', 'devtools', 'uuid', 'digest'))
devtools::install_github('IRkernel/IRkernel')
IRkernel::installspec()

You may potentially be able to use steps from https://irkernel.github.io/installation, but we can't guarantee that.

[wadethestealth]

After further review, this could be an issue unrelated to your installation, but I am unsure of a root cause.

cc: @BenRussert @aviatesk

[wadethestealth]

I saw this issue report recently with #1237, but am unsure how your workflow relates to the same issue still

[Ujustwaite]

Same issue. Clean install and have similar symptoms. R kernel is detected by hydrogen on launch of atom and listed in popup dialog, but no code execution occurs. I don't get the error that the user does which appears to be related to the Python kernel and not R, but just don't get any execution.

Have language-r grammar installed.

jupyter kernelspec list

shows the ir kernel as present and available, reinforcing that atom is able to detect.