xarray: N-D labeled arrays and datasets

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xarray (formerly xray) is an open source project and Python package that aims to bring the labeled data power of pandas to the physical sciences, by providing N-dimensional variants of the core pandas data structures.

Our goal is to provide a pandas-like and pandas-compatible toolkit for analytics on multi-dimensional arrays, rather than the tabular data for which pandas excels. Our approach adopts the Common Data Model for self- describing scientific data in widespread use in the Earth sciences: xarray.Dataset is an in-memory representation of a netCDF file.

Why xarray?

Adding dimensions names and coordinate indexes to numpy's ndarray makes many powerful array operations possible:

Apply operations over dimensions by name: x.sum('time').
Select values by label instead of integer location: x.loc['2014-01-01'] or x.sel(time='2014-01-01').
Mathematical operations (e.g., x - y) vectorize across multiple dimensions (array broadcasting) based on dimension names, not shape.
Flexible split-apply-combine operations with groupby: x.groupby('time.dayofyear').mean().
Database like alignment based on coordinate labels that smoothly handles missing values: x, y = xr.align(x, y, join='outer').
Keep track of arbitrary metadata in the form of a Python dictionary: x.attrs.

pandas provides many of these features, but it does not make use of dimension names, and its core data structures are fixed dimensional arrays.

Why isn't pandas enough?

pandas excels at working with tabular data. That suffices for many statistical analyses, but physical scientists rely on N-dimensional arrays -- which is where xarray comes in.

xarray aims to provide a data analysis toolkit as powerful as pandas but designed for working with homogeneous N-dimensional arrays instead of tabular data. When possible, we copy the pandas API and rely on pandas's highly optimized internals (in particular, for fast indexing).

Why netCDF?

Because xarray implements the same data model as the netCDF file format, xarray datasets have a natural and portable serialization format. But it is also easy to robustly convert an xarray DataArray to and from a numpy ndarray or a pandas DataFrame or Series, providing compatibility with the full PyData ecosystem.

Our target audience is anyone who needs N-dimensional labeled arrays, but we are particularly focused on the data analysis needs of physical scientists -- especially geoscientists who already know and love netCDF.

Documentation

The official documentation is hosted on ReadTheDocs at http://xarray.pydata.org/

Get in touch

Ask usage questions on StackOverflow.
Report bugs, suggest features or view the source code on GitHub.
For less well defined questions or ideas, use the mailing list.
You can also try our chatroom on Gitter.

History

xarray is an evolution of an internal tool developed at The Climate Corporation. It was originally written by Climate Corp researchers Stephan Hoyer, Alex Kleeman and Eugene Brevdo and was released as open source in May 2014. The project was renamed from "xray" in January 2016.

License

Copyright 2014-2017, xarray Developers

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

xarray bundles portions of pandas, NumPy and Seaborn, all of which are available under a "3-clause BSD" license: - pandas: setup.py - NumPy: xarray/core/npcompat.py - Seaborn: _determine_cmap_params in xarray/core/plot/utils.py

xarray also bundles portions of CPython, which is available under the "Python Software Foundation License" in xarray/core/pycompat.py.

The full text of these licenses are included in the licenses directory.

License

martindurant/xarray

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