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bin
bin
 
 
blast-db
blast-db
 
 
checks
checks
 
 
data
data
 
 
templates
templates
 
 
.gitignore
.gitignore
 
 
Dockerfile
Dockerfile
 
 
README.md
README.md
 
 
ampa.nf
ampa.nf
 
 
basic.nf
basic.nf
 
 
blast-parallel.nf
blast-parallel.nf
 
 
blast.nf
blast.nf
 
 
buffer.nf
buffer.nf
 
 
cache-bak.nf
cache-bak.nf
 
 
chunk.nf
chunk.nf
 
 
cleanup.sh
cleanup.sh
 
 
cli-args.nf
cli-args.nf
 
 
collect-and-merge.nf
collect-and-merge.nf
 
 
collect-file.nf
collect-file.nf
 
 
collect-tuple.nf
collect-tuple.nf
 
 
complex-names.nf
complex-names.nf
 
 
config-labels-included.config
config-labels-included.config
 
 
config-labels.config
config-labels.config
 
 
config-labels.nf
config-labels.nf
 
 
config-vars.config
config-vars.config
 
 
config-vars.nf
config-vars.nf
 
 
copy-no-follow.nf
copy-no-follow.nf
 
 
custom-lib.nf
custom-lib.nf
 
 
delta.config
delta.config
 
 
demo.nf
demo.nf
 
 
dyn-mem.nf
dyn-mem.nf
 
 
dynamic-filename.nf
dynamic-filename.nf
 
 
dynamic-storedir.nf
dynamic-storedir.nf
 
 
each-file.nf
each-file.nf
 
 
env-container-with(special)chars.nf
env-container-with(special)chars.nf
 
 
env-container.nf
env-container.nf
 
 
env-out.nf
env-out.nf
 
 
env2.nf
env2.nf
 
 
error-finish.nf
error-finish.nf
 
 
error-ignore-then-fail.nf
error-ignore-then-fail.nf
 
 
error-message.nf
error-message.nf
 
 
error.nf
error.nf
 
 
escape-globs.nf
escape-globs.nf
 
 
eval-out.nf
eval-out.nf
 
 
exit-if-empty.nf
exit-if-empty.nf
 
 
exitstatus-fail.nf
exitstatus-fail.nf
 
 
fair.nf
fair.nf
 
 
file-with-blanks.nf
file-with-blanks.nf
 
 
file-with-quote.nf
file-with-quote.nf
 
 
files.nf
files.nf
 
 
fusion-symlink.nf
fusion-symlink.nf
 
 
glob.nf
glob.nf
 
 
hello.nf
hello.nf
 
 
input.nf
input.nf
 
 
mixing-langs.nf
mixing-langs.nf
 
 
nativeCode.nf
nativeCode.nf
 
 
nextflow.config
nextflow.config
 
 
omega.config
omega.config
 
 
opt-file.nf
opt-file.nf
 
 
output-dsl.nf
output-dsl.nf
 
 
output-file.nf
output-file.nf
 
 
output-globs.nf
output-globs.nf
 
 
output-links.nf
output-links.nf
 
 
output-val.nf
output-val.nf
 
 
print-http-file.nf
print-http-file.nf
 
 
process-arity.nf
process-arity.nf
 
 
profiles.config
profiles.config
 
 
profiles.nf
profiles.nf
 
 
property-out-vals.nf
property-out-vals.nf
 
 
publish-dir.nf
publish-dir.nf
 
 
publish-nested.nf
publish-nested.nf
 
 
publish-s3-kms.nf
publish-s3-kms.nf
 
 
publish-s3.nf
publish-s3.nf
 
 
publish-saveas.nf
publish-saveas.nf
 
 
race.nf
race.nf
 
 
repeaters.nf
repeaters.nf
 
 
resume-retried-task.nf
resume-retried-task.nf
 
 
retry-ignore.nf
retry-ignore.nf
 
 
s3-files.nf
s3-files.nf
 
 
s3-public.nf
s3-public.nf
 
 
shell-script.nf
shell-script.nf
 
 
singleton.nf
singleton.nf
 
 
splitLetters.nf
splitLetters.nf
 
 
stage-file.nf
stage-file.nf
 
 
storeCache.nf
storeCache.nf
 
 
stub-retry.nf
stub-retry.nf
 
 
subdirs.nf
subdirs.nf
 
 
subworkflow-take.nf
subworkflow-take.nf
 
 
subworkflow.nf
subworkflow.nf
 
 
tag-resume.config
tag-resume.config
 
 
tag-resume.nf
tag-resume.nf
 
 
tagging-lazy.nf
tagging-lazy.nf
 
 
tagging.nf
tagging.nf
 
 
task-attempts.nf
task-attempts.nf
 
 
task-escape-path.nf
task-escape-path.nf
 
 
task-escape-path.sh
task-escape-path.sh
 
 
task-retry.nf
task-retry.nf
 
 
task-vars.nf
task-vars.nf
 
 
template-dyn.nf
template-dyn.nf
 
 
template-shell.nf
template-shell.nf
 
 
template-simple.nf
template-simple.nf
 
 
template.config
template.config
 
 
topic-channel.nf
topic-channel.nf
 
 
trace-access.nf
trace-access.nf
 
 
tuples.nf
tuples.nf
 
 
watch.nf
watch.nf
 
 
when-block.nf
when-block.nf
 
 
workdir-with-blank.nf
workdir-with-blank.nf
 
 
workflow-oncomplete.nf
workflow-oncomplete.nf
 
 
yesOrNo.nf
yesOrNo.nf
 
 

README.md

Nextflow tests (v1)

This folder contains the integration tests from before the strict syntax was introduced. It is providied here as a historical reference, and to ensure that the lenient script parser continues to behave consistently.