The document GL-DPPD-7111.md holds an overview and example commands for how GeneLab processes single cell RNA-sequencing (scRNAseq) datasets. See the Repository Links descriptions below for more information. Processed data output files and a GeneLab data processing summary is provided for each GLDS dataset in the GeneLab Data Systems (GLDS) repository.

• Pipeline_GL-DPPD-7111_Versions

  • Contains the current and previous GeneLab single cell RNAseq consensus processing pipeline (scRCP) versions documentation

• scRNAseq_Tool_Install

  • Contains instructions and associated yaml files to install the conda environments containing tools used to process single cell RNAseq datasets using the GeneLab scRCP

• GLDS_Processing_Scripts

  • Contains the exact processing commands and scRCP version used for specific GLDS datasets that have been released and are available in the GeneLab Data Systems (GLDS) repository

Developed and maintained by:

Lauren Sanders