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    78 repositories

    • scripts

      Public
      Sharing and versioning processing scripts of studies
      Python
      •1•5•0•0•Updated Jul 18, 2025Jul 18, 2025

    • pymultifracs

      Public
      Wavelet based multifractal analysis of 1D signals
      Python
      •
      MIT License
      •17•34•1•3•Updated Jul 16, 2025Jul 16, 2025

    • nitk

      Public
      Neuroimaging Toolkit
      Python
      •2•2•0•1•Updated Jul 11, 2025Jul 11, 2025

    • neurospin_to_bids

      Public
      Tool for exporting imaging data from the NeuroSpin archive in BIDS format
      Python
      •
      Other
      •1•6•5•0•Updated Jul 11, 2025Jul 11, 2025

    • brainvisa_recipes

      Public
      Jupyter Notebook
      •
      BSD 2-Clause "Simplified" License
      •1•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • ciel

      Public
      The CIEL website
      TeX
      •1•0•0•0•Updated Jun 21, 2025Jun 21, 2025

    • neuro-forge

      Public
      Provisioning of neuroimaging workspace for image processing and data analysis
      Python
      •0•1•4•2•Updated Jun 13, 2025Jun 13, 2025

    • deep_folding

      Public
      Jupyter Notebook
      •
      Other
      •3•8•2•2•Updated Jun 11, 2025Jun 11, 2025

    • highres-cortex

      Public
      Analysis tools for sub-millimetre MRI of the cerebral cortex
      neuroimagingcortexbrainvisac-plus-plus
      C++
      •8•14•0•1•Updated Jun 6, 2025Jun 6, 2025

    • champollion-V0

      Public
      0•0•0•0•Updated May 28, 2025May 28, 2025

    • ginkgo

      Public
      The GINKGO website
      SCSS
      •
      Other
      •0•0•0•1•Updated May 19, 2025May 19, 2025

    • gaia

      Public
      The GAIA website
      TeX
      •6•0•2•3•Updated May 16, 2025May 16, 2025

    • brainomics

      Public
      The BRAINOMICS website
      TeX
      •
      Other
      •0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • baobab

      Public
      The BAOBAB website
      SCSS
      •
      Other
      •1•1•1•0•Updated Apr 23, 2025Apr 23, 2025

    • metric

      Public
      The METRIC website
      TeX
      •6•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • pycaravel

      Public archive
      This module has been created to simplify the search of datasets in a BIDS directory or a CubicWeb instance.
      Python
      •
      Other
      •0•0•1•0•Updated Mar 13, 2025Mar 13, 2025

    • neurospin.github.io

      Public
      The NeuroSpin minimal experimental website
      CSS
      •0•0•0•0•Updated Mar 5, 2025Mar 5, 2025

    • ROILoc

      Public
      Python script based on ANTs to locate (center & crop) any region given in the CerebrA atlas, while keeping the MRI in its native space.
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 15, 2024Nov 15, 2024

    • HSF

      Public
      Hippocampal Segmentation Factory (HSF). A one-liner Deep Learning tool to segment raw T2w (and T1w) MRIs into hippocampal subfields in few seconds. Trained on 700+ manually segmented hippocampi.
      Python
      •4•0•1•0•Updated Nov 15, 2024Nov 15, 2024

    • pylearn-mulm

      Public
      Massive univariate linear model
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •2•5•0•0•Updated Feb 13, 2024Feb 13, 2024

    • hsf_train

      Public
      Training code for the Hippocampal Segmentation Factory
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 11, 2024Feb 11, 2024

    • Gondova_2023

      Public
      Code for Gondova et al., 2022 (Neuroimage: Reports)
      Jupyter Notebook
      •1•0•0•0•Updated Jan 26, 2024Jan 26, 2024

    • Neumane_2022

      Public
      Code for Neumane et al., 2022 (Frontiers in Human Neuroscience)
      Jupyter Notebook
      •1•0•0•0•Updated Jan 26, 2024Jan 26, 2024

    • colorado

      Public
      interactive 3D plots in juptrer notebooks
      Python
      •
      MIT License
      •1•2•0•0•Updated Nov 30, 2023Nov 30, 2023

    • dico_toolbox

      Public
      a pythonic toolbox for Brainvisa entities
      Python
      •1•0•0•0•Updated Sep 29, 2023Sep 29, 2023

    • pypreprocess

      Public
      Preprocessing scripts for neuro imaging
      Python
      •65•110•45•13•Updated Sep 28, 2023Sep 28, 2023

    • point-cloud-pattern-mining

      Public
      point-clouds manipulation
      Python
      •3•2•0•0•Updated Jul 10, 2023Jul 10, 2023

    • netSGCCA

      Public
      netSGCCA in Python
      Jupyter Notebook
      •
      MIT License
      •0•1•0•0•Updated May 22, 2023May 22, 2023

    • CC-parcellation-from-tractography

      Public
      Parcellation of the mid-sagittal section of the corpus callosum based on bilateral homotopic connectivity
      Shell
      •
      Creative Commons Attribution 4.0 International
      •0•0•0•0•Updated May 17, 2023May 17, 2023

    • pylearn-parsimony

      Public
      Structured Machine Learning in Python
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •17•46•18•3•Updated Apr 14, 2023Apr 14, 2023