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@greenelab

Greene Laboratory

Greene Laboratory at the University of Colorado Anschutz

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  1. scihub Public

    Source code and data analyses for the Sci-Hub Coverage Study

    Jupyter Notebook 296 39

  2. BioBombe Public

    BioBombe: Sequentially compressed gene expression features enhances biological signatures

    Jupyter Notebook 65 26

  3. lab-website-template Public template

    An easy-to-use, flexible website template for labs.

    HTML 457 380

  4. covid19-review Public

    A collaborative review of the emerging COVID-19 literature. Join the chat here:

    TeX 117 81

  5. deep-review Public

    A collaboratively written review paper on deep learning, genomics, and precision medicine

    HTML 1.3k 272

  6. tybalt Public

    Training and evaluating a variational autoencoder for pan-cancer gene expression data

    HTML 170 63

Repositories

Showing 10 of 172 repositories
  • scrumlord Public

    Continuous administration of the Greene Lab's electronic scrum

    Python 13 BSD-3-Clause 9 2 1 Updated Jul 11, 2025
  • greenelab.com Public

    The website source code for greenelab.com

    HTML 1 BSD-3-Clause 25 1 0 Updated Jul 11, 2025
  • deconvolution_sc_sn_comparison Public

    The following repository is a work in progress. The Aim is to deconvolve samples with SC and SN, comparing performance.

    Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Jul 9, 2025
  • HGSOC_Adipocytes Public

    Deconvolution of bulk RNA-seq samples of HGSOC including adipocytes.

    0 BSD-3-Clause 1 0 0 Updated Jul 7, 2025
  • deconvolution_adipocytes Public

    The following repository is a work in progress. the Aim is to deconvolve HGSOC samples with added adipocyte signal.

    R 0 BSD-3-Clause 2 0 1 Updated Jun 16, 2025
  • lab-website-template Public template

    An easy-to-use, flexible website template for labs.

    HTML 457 BSD-3-Clause 380 9 0 Updated May 13, 2025
  • lab-website-template-docs Public

    GitBook documentation for Lab Website Template

    3 2 2 0 Updated Apr 7, 2025
  • HTML 0 BSD-3-Clause 0 1 0 Updated Mar 27, 2025
  • pred_missing_celltypes Public

    Predicting missing cell-type proportions from deconvolution residual using NNLS.

    Jupyter Notebook 2 BSD-3-Clause 1 0 0 Updated Mar 12, 2025
  • CNN_deconvolution Public

    Ongoing project on deconvolution using higher-dimensional image representations of gene expression data.

    Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Mar 10, 2025

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