fixing handson_analysis - saving output from plot_glass_brain to a png file to avoid issues with size limit

Author: djarecka

notebooks/handson_analysis.ipynb

@@ -998,8 +998,11 @@
    "outputs": [],
    "source": [
     "plot_glass_brain('/output/datasink_handson/normalized/sub-07/wess_0008.nii',\n",
+    "                 output_file=\"/output/datasink_handson/normalized/sub-07/f-contr_activation.png\",\n",
     "                 colorbar=True, display_mode='lyrz', black_bg=True, threshold=25,\n",
-    "                 title='subject 7 - F-contrast: Activation');"
+    "                 title='subject 7 - F-contrast: Activation');\n",
+    "\n",
+    "Image(filename='/output/datasink_handson/normalized/sub-07/f-contr_activation.png')"
    ]
   },
   {
@@ -1009,8 +1012,11 @@
    "outputs": [],
    "source": [
     "plot_glass_brain('/output/datasink_handson/normalized/sub-07/wess_0009.nii',\n",
+    "                 output_file=\"/output/datasink_handson/normalized/sub-07/f-contr_differences.png\",\n",
     "                 colorbar=True, display_mode='lyrz', black_bg=True, threshold=25,\n",
-    "                 title='subject 7 - F-contrast: Differences');"
+    "                 title='subject 7 - F-contrast: Differences');\n",
+    "\n",
+    "Image(filename='/output/datasink_handson/normalized/sub-07/f-contr_differences.png')"
    ]
   },
   {
@@ -1648,7 +1654,7 @@
  "metadata": {
   "anaconda-cloud": {},
   "kernelspec": {
-   "display_name": "Python [default]",
+   "display_name": "Python 3",
    "language": "python",
    "name": "python3"
   },
@@ -1662,7 +1668,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.6.5"
+   "version": "3.7.8"
   }
  },
  "nbformat": 4,