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  1. db_tools db_tools Public

    Python 1 3

  2. snakemake-pipelines snakemake-pipelines Public

    Forked from CacconeLabYale/snakemake-pipelines

    snakemake-implemented pipelines

    HTML

  3. prep-data-for-ibd-portal prep-data-for-ibd-portal Public

    Forked from xguse/prep-data-for-ibd-portal

    This pipeline prepares VCFs and other data for importation to the Schadt group's variant analysis protal.

    Python 1

  4. cookiecutter-data-science cookiecutter-data-science Public

    Forked from drivendataorg/cookiecutter-data-science

    A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

    Python

  5. Ileal_Tx_CD_Haberman_2014 Ileal_Tx_CD_Haberman_2014 Public

    Shell

  6. veoibd_misc veoibd_misc Public

    Python

Repositories

Showing 10 of 20 repositories
  • db_tools Public
    Python 1 MIT 3 1 6 Updated Dec 8, 2022
  • veoibd-synapse-data-manager Public

    An interface for uploading and annotating data to Synapse for members of the VEOIBD consortium.

    Python 0 MIT 1 2 1 Updated Nov 29, 2018
  • cookiecutter-data-science Public Forked from drivendataorg/cookiecutter-data-science

    A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

    Python 0 MIT 2,508 0 0 Updated Jun 14, 2018
  • biopyramid Public Forked from jarny/biopyramid

    Framework for developing an online genomics application

    Python 0 MIT 2 0 0 Updated Feb 12, 2018
  • coordinator_data_tasks Public
    Python 0 MIT 1 0 1 Updated Oct 26, 2017
  • biorep-etl Public
    Python 0 MIT 0 5 0 Updated Sep 29, 2017
  • gemini Public Forked from arq5x/gemini

    a lightweight db framework for exploring genetic variation.

    Python 0 MIT 120 0 0 Updated Sep 12, 2017
  • vcf2db Public Forked from quinlan-lab/vcf2db

    create a gemini-compatible database from a VCF

    Python 0 13 0 0 Updated Sep 6, 2017
  • GSEApy Public Forked from zqfang/GSEApy

    Gene Set Enrichment Analysis in Python

    Python 0 MIT 127 0 0 Updated Sep 2, 2017
  • pytest-ngsfixtures Public Forked from percyfal/pytest-ngsfixtures

    pytest fixtures for next generation sequencing applications

    Python 0 2 0 0 Updated Aug 22, 2017
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