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Pull requests: NVIDIA/bionemo-framework

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Pull requests list

adding .obs
#1246 opened Oct 11, 2025 by polinabinder1 • Draft
9 tasks
2
Minor recipe linting
#1245 opened Oct 10, 2025 by pstjohn Loading…
2
SCDL compression
#1244 opened Oct 10, 2025 by polinabinder1 Loading…
2 of 5 tasks
56
updates for jonathan
#1239 opened Oct 8, 2025 by pstjohn • Draft
2
LM Eval and llama support in prediction/optimizer removal
#1238 opened Oct 8, 2025 by jstjohn Loading…
9 tasks
20
add fp8 to distributed checkpointing tests
#1236 opened Oct 8, 2025 by pstjohn Loading…
18
[WIP] Update MegatronCore + NeMo without base image update
#1233 opened Oct 7, 2025 by trvachov Loading…
9 tasks
5
CI tests on multi-GPU runners ciflow:slow Run slow single GPU integration tests marked as @pytest.mark.slow for bionemo2
#1229 opened Oct 7, 2025 by gagank1 • Draft
9 tasks
@gagank1
18
Bump 3rdparty/Megatron-LM from f8d3e2e to c7bc889 dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#1226 opened Oct 6, 2025 by dependabot bot Loading…
2
Bump 3rdparty/NeMo from 8c6fd8b to 56ddc45 dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#1225 opened Oct 6, 2025 by dependabot bot Loading…
2
LLAMA3 SQLite Baseline with ASCII Tokenizer
#1217 opened Oct 2, 2025 by savitha-eng • Draft
9 tasks
17
[WIP] LLAMA3 Integration with BioNeMo Recipes with ASCII Tokenization/EVO2-Style Dataloader
#1205 opened Sep 29, 2025 by savitha-eng • Draft
24
[WIP] Update base dependencies ciflow:all Run all tests (unit tests, slow tests, and notebooks) for bionemo2 or enforce running all tests
#1194 opened Sep 25, 2025 by trvachov Loading…
1 of 9 tasks
11
Fix checkpoint bug bad checkpoint hydra structure
#1185 opened Sep 24, 2025 by jomitchellnv Loading…
9 tasks
5
Set up Slack Alerts for nv-gha-actions
#1182 opened Sep 23, 2025 by savitha-eng Loading…
1 of 5 tasks
9
evo2 dlsim validation [Do Not Merge]
#1181 opened Sep 23, 2025 by broland-hat • Draft
9 tasks
2
Bump rust from 1.86.0 to 1.90.0 dependencies Pull requests that update a dependency file docker Pull requests that update docker code
#1174 opened Sep 22, 2025 by dependabot bot Loading…
2
enable predict.py for llama
#1142 opened Sep 10, 2025 by yzhang123 Loading…
2 of 9 tasks
6
Geneformer: TransformerEngine checkpoint conversion
#1139 opened Sep 9, 2025 by ohadmo Loading…
9 tasks
45
[Benchmarks] update evo2 finetuning with subquadratic pckg ciflow:skip Skip all CI tests for this PR
#1131 opened Sep 8, 2025 by dorotat-nv Loading…
1 of 9 tasks
1
ESM2: TransformerEngine to HuggingFace checkpoint support
#1121 opened Sep 5, 2025 by ohadmo Loading… LHA-ready
36
Bump torch from 2.6.0a0+ecf3bae40a.nv25.01 to 2.8.0 in /models/amplify dependencies Pull requests that update a dependency file python Pull requests that update Python code
#1116 opened Sep 5, 2025 by dependabot bot Loading…
4
Eden dataloader
#1114 opened Sep 5, 2025 by Geraldene Loading…
9 tasks
17
use gha cache for bionemo test data
#1098 opened Sep 2, 2025 by pstjohn Loading…
9
Fix train_evo2 constant steps description
#1094 opened Sep 1, 2025 by jannis-baum Loading…
5 of 9 tasks
3
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