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@LaborBerlin

Labor Berlin - Charité Vivantes GmbH

Clinical Plattform "Bioinformatics & Data Science"

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  1. varvis-download Public

    A CLI tool to download genomic analysis files from the Varvis API. Supports authentication, file type selection, proxy settings, and destination directory specification.

    JavaScript 4

  2. score-assemblies Public

    Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).

    Python 26 1

  3. ont-assembly-snake Public

    Snakemake workflow for bacterial genome assembly + polishing for Oxford Nanopore (ONT) sequencing using multiple tools.

    Python 27 3

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