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create separate test file for lib.mdamath

refactoring

testing

Status: Open.

Feature

#5064 In MDAnalysis/mdanalysis;

· orbeckst opened on Jun 11, 2025

compile failure due to numpy issues in transformations.c

Component-lib

defect

installation

Status: Open.

Bug

#5061 In MDAnalysis/mdanalysis;

· orbeckst opened on Jun 11, 2025

Chain ID not detected in DCD and PDB files created with VMD

Format-PDB

more information neededPlease reply to requests for information or the issue will be closed.Please reply to requests for information or the issue will be closed.

Status: Open.

#5058 In MDAnalysis/mdanalysis;

· biomolsim opened on Jun 2, 2025

MDAnalysis fails with Cython 3.1.0

installation

maintainability

Priority-High

testing

Status: Open.

Bug

#5057 In MDAnalysis/mdanalysis;

· IAlibay opened on May 31, 2025

Bug in conversion units of speed

Component-Core

defect

Status: Open.

Bug

#5051 In MDAnalysis/mdanalysis;

· raulloiscuns opened on May 27, 2025

confusing error message from DSSP for too short peptide stretches

Component-Analysis

Component-Docs

help wanted

Status: Open.

#5046 In MDAnalysis/mdanalysis;

· mrobinson-hub opened on May 14, 2025

Incorrect versionchanged for changes in #3608

Component-Docs

help wanted

Status: Open.

#5044 In MDAnalysis/mdanalysis;

· RMeli opened on May 9, 2025

Optimization Suggestion: Replace np.ediff1d with array slicing for faster difference-based splitting

close?Evaluate if issue/PR is stale and can be closed.Evaluate if issue/PR is stale and can be closed.

Status: Open.

Feature

#5033 In MDAnalysis/mdanalysis;

· SaFE-APIOpt opened on Apr 18, 2025

Query: amino acid residue charges

Format-Amber

question

Status: Open.

#5032 In MDAnalysis/mdanalysis;

· tylerjereddy opened on Apr 18, 2025

Support for Amber NetCDF Restart Files (.ncrst)

Component-Readers

Component-Topology

enhancement

Format-Amber

Status: Open.

Feature

#5030 In MDAnalysis/mdanalysis;

· jeremyleung521 opened on Apr 17, 2025

Support for MDAnalysis packages dealing with non-linear time dump

Component-Analysis

enhancement

usability

Status: Open.

Feature

#5028 In MDAnalysis/mdanalysis;

· gitsirsha opened on Apr 16, 2025

Remove macos-13 runners from standard tests

Continuous Integration

decision neededrequires input from developers before moving furtherrequires input from developers before moving further

OpSys-OSX

Status: Open.

#5023 In MDAnalysis/mdanalysis;

· IAlibay opened on Apr 11, 2025