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scikit-learn-contrib/sklearn-ann
[Feature Request] Add `kneighbors_graph` method to all transformers supporting mode={"connectivity", "distance"} and include_self={True,False}

I m trying to adapt some methods that use kneighbors_graph from scikit-learn but I need access to the mode=connectivity and include_self=True which are not supported in the current fit methods. Here s ...
  • jolespin
  • Opened 
    on May 20, 2024
  • #41

scikit-learn-contrib/sklearn-ann
Document parameters of FAISS

It would be nice if the parameters of the transformers were documented more fully. In particular, FAISS s index_key argument is not particularly intuitive, and I think can have fairly complex variations. ...
  • ivirshup
  • Opened 
    on Mar 22, 2024
  • #32

scikit-learn-contrib/sklearn-ann
Fix readme to make releases possible

The release workflows currently fail with Checking dist/sklearn_ann-0.1.1-py3-none-any.whl: FAILED ERROR `long_description` has syntax errors in markup and would not be rendered on ...
  • flying-sheep
  • 3
  • Opened 
    on Mar 14, 2024
  • #24

scikit-learn-contrib/sklearn-ann
Installation instructions

It would be nice if there were documented installation instructions, including information about what extras were available. Likely downstream of #21 and getting a name on pypi.
  • ivirshup
  • Opened 
    on Mar 14, 2024
  • #22

scikit-learn-contrib/sklearn-ann
Publish to pypi?

AFAICT this isn t available on pypi. Could it get published?
  • ivirshup
  • Opened 
    on Mar 14, 2024
  • #21

scikit-learn-contrib/sklearn-ann
Fix pre-commit check on main

Seems like the no-commit-to-branch hook gets run on main. I assume pre-commit.ci skips it somehow. We should do that too for that nice green checkmark
  • flying-sheep
  • Opened 
    on Dec 13, 2023
  • #18

scikit-learn-contrib/sklearn-ann
Fix readme for hatch

  • frankier
  • Opened 
    on Oct 14, 2023
  • #16

scikit-learn-contrib/sklearn-ann
Maintenance status

Hi, is this still maintained? We’d be interested to include something like it into scanpy. In case you’re no longer interested in maintenance, maybe we could transfer this project to scverse and take ...
  • flying-sheep
  • 19
  • Opened 
    on Jun 26, 2023
  • #8

scikit-learn-contrib/sklearn-ann
Specialised parameter search

Can get k = max knn graph and then iteratively truncate it and rerun Can produce histogram as well as validation indices
RNN-DBSCAN
  • frankier
  • 1
  • Opened 
    on Jan 3, 2021
  • #7

scikit-learn-contrib/sklearn-ann
Investigate whether it's possible to make some of the knn indices picklable

It is possible to mmap within a pickle: https://github.com/UniNE-CHYN/mmappickle so there might be hope
  • frankier
  • 1
  • Opened 
    on Jan 3, 2021
  • #6
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