A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.
Repository containing lists of all published ancient metagenomic (and related) samples and libraries
Damage parameter estimation for ancient DNA
Coprolite host Identification pipeline
A small R notebook describing how plot common (aDNA) population genetics PCAs using R and the tidyverse.
The Poseidon Community Archive (PCA).
Repository of code for the paper "The evolutionary history of Neandertal and Denisovan Y chromosomes" by Petr et al.
Uncertainty estimation toolkit for dimensionality reduction on population genetics data.
Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
R Package - Spatiotemporal Ancestry Interpolation and Search
A toolset to work with modular genotype databases in the Poseidon format
A pipeline for the analysis of sedimentary ancient mtDNA
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
Main landing page for getting information about the Poseidon project
🗑️🦷 decOM 🦷🗑️
Statement of the Ethics Discussion Group at the Department of Archaeogenetics (MPI-SHH/MPI-EVA)
Website and data repository a directory of ancient metagenomic labs
Small program to mask positions that are likely to result in PMD artifact from a BAM file using a predefined SNP catalog
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