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@cytoscape

Cytoscape Consortium

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  1. cytoscape cytoscape Public

    Cytoscape: an open source platform for network analysis and visualization

    Shell 634 145

  2. cytoscape-web cytoscape-web Public

    A browser-based implementation of Cytoscape for network visualization and analysis. Runs entirely in your browser with data-driven styling, collaborative workflows, and Cytoscape ecosystem integrat…

    TypeScript 15 8

  3. cytoscape.js cytoscape.js Public

    Graph theory (network) library for visualisation and analysis

    JavaScript 10.5k 1.6k

  4. cytoscape-api cytoscape-api Public

    Cytoscape 3 API bundles.

    Java 24 33

  5. cyREST cyREST Public

    Core App: REST API module for Cytoscape

    JavaScript 31 13

  6. py4cytoscape py4cytoscape Public

    Python library for calling Cytoscape Automation via CyREST

    Python 82 15

Repositories

Showing 10 of 160 repositories
  • cytoscape-web Public

    A browser-based implementation of Cytoscape for network visualization and analysis. Runs entirely in your browser with data-driven styling, collaborative workflows, and Cytoscape ecosystem integration.

    cytoscape/cytoscape-web’s past year of commit activity
    TypeScript 15 MIT 8 0 2 Updated Jun 18, 2025
  • cytoscape.js Public

    Graph theory (network) library for visualisation and analysis

    cytoscape/cytoscape.js’s past year of commit activity
    JavaScript 10,475 MIT 1,643 13 1 Updated Jun 17, 2025
  • network-ptm-integration Public

    This repo tracks the work of data-driven addition of phosphorylation sites to proteins in networks (and pathways).

    cytoscape/network-ptm-integration’s past year of commit activity
    R 0 MIT 0 8 0 Updated Jun 17, 2025
  • cx Public

    CX serialization and de-serialization in Cytoscape

    cytoscape/cx’s past year of commit activity
    Java 3 1 8 1 Updated Jun 12, 2025
  • RCy3 Public

    New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community

    cytoscape/RCy3’s past year of commit activity
    R 52 MIT 20 7 0 Updated Jun 11, 2025
  • enrichment-map-webapp Public
    cytoscape/enrichment-map-webapp’s past year of commit activity
    JavaScript 6 MIT 0 9 0 Updated Jun 6, 2025
  • cytoscape.js-cxtmenu Public

    Context menu for Cytoscape.js

    cytoscape/cytoscape.js-cxtmenu’s past year of commit activity
    JavaScript 172 MIT 84 0 1 Updated Jun 6, 2025
  • cytoscape.js-popper Public

    A wrapper for Popper.js that lets you position divs relative to Cytoscape elements

    cytoscape/cytoscape.js-popper’s past year of commit activity
    JavaScript 103 MIT 23 0 1 Updated Jun 6, 2025
  • cytoscape.js-cola Public

    The Cola.js physics simulation layout for Cytoscape.js

    cytoscape/cytoscape.js-cola’s past year of commit activity
    JavaScript 160 MIT 68 0 1 Updated Jun 6, 2025
  • cytoscape.js-klay Public

    The Klay layout algorithm for Cytoscape.js

    cytoscape/cytoscape.js-klay’s past year of commit activity
    JavaScript 93 MIT 42 0 1 Updated Jun 6, 2025
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