Discussions

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  Unexpected Methane production in Methanosarcina mazei ΔMcr mutant using gapseq

  CynthiaChibani started May 23, 2025 in General

  

  

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  Is it possible to use gapseq to analyze tens or hundreds of genomes simultaneously?

  Dandlion-Z asked Jun 28, 2024 in Q&A · Closed · Unanswered

  

  

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  Is there any (big) disadvantage to not download/update uniprot everytime?

  Unaimend asked Mar 6, 2024 in Q&A · Unanswered

  

  

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  Designing gap-fill medium for rhizosphere microbes

  arijitnus asked Oct 10, 2023 in Q&A · Closed · Unanswered

  

  

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  Dealing with variability in reconstructed models

  jonasoh started Apr 27, 2023 in General

  

  

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  Trust worthy e-value for gapseq find-transporter

  Calvin2077 asked Mar 12, 2023 in Q&A · Unanswered

  

  

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  Missing MetaCyc reaction

  NMorella asked Mar 3, 2023 in Q&A · Unanswered

  

  

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  Generating a figure like Figure 6 of your published paper

  msreza007 asked Mar 2, 2023 in Q&A · Unanswered

  

  

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  Seconder Metabolite Finding

  airbender97 started Sep 20, 2022 in Ideas

  

  

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  Solving environment: failed HELP!

  airbender97 asked Sep 9, 2022 in Q&A · Unanswered

  

  

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  Can gapseq work for strains?

  cdiener asked Jul 14, 2022 in Q&A · Unanswered

  

  

  

  

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  Using sybilSBML on already-generated .RDS files

  arbujold asked Jun 8, 2022 in Q&A · Unanswered

  

  

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  gapseq_find taxonomy and unreviewed sequences use

  MRMHmdeleeuw asked Jun 20, 2022 in Q&A · Answered

  

  

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  Is "doall" command quite by default?

  maringos asked Mar 2, 2022 in Q&A · Unanswered

  

  

  

  

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  could the annotated sequence as the input for gapseq

  hongzhonglu started Dec 23, 2020 in Ideas

  

  

  

  

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  Version controlling the universal model and the sequences

  Midnighter started Jun 23, 2021 in Ideas

  

  

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  Can you provide guidance on optimal resource allocation?

  Midnighter asked Apr 28, 2021 in Q&A · Unanswered

  

  

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