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JacobKMcPherson/README.md

Welcome! Please check out my...

Scholarly Works and Socials

PubMed Scholar Scopus ORCID ResearchGate

Favorite Tools and Languages

GitHub Git AWS Ubuntu Docker

R Python Julia LaTeX

Overleaf RStudio Jupyter VSCode

shiny quarto rmarkdown tidyverse

SciPy NumPy Pandas Plotly

Keras PyTorch TensorFlow Markdown Netlify

Favorite Resources for...

Data: RedCap EMBL-EBI NCBI BioProject SRA Genome PubChem

Data Coalitions: Global BioData OpenData Elixir OmicsDI DDBJ EMBL-EBI NCBI SIB

High-Performance Computing: NIH HPC NSF Access TACC

Small Molecules Drugs: ChEBI ChEMBL BindingDB DrugBank SwissDrug OrphData IUPHAR PharmGKB ChemAxon

Life Science Vendors: Schrodinger Qiagen Eppendorf Thermo Emerald Cloud Labs

Infectious Diseases: BacDive BEI AR Isolate Bank(CDC) BV-BRC MGnify CARD Silva EcoCyc SubtiWiki FungiDB LPSN ViralZone ViralHostRangeDB VirusHostDB(JP) Viruses(NCBI) HIVDB

Proteins and Enzymes: UniProt UniProt3D EMPIAR EMDB [EMDataResource() CryoSPARC Cryo-ET WW-PDB RCSB-PDB InterPro UCSF ChimeraX OpenStructure CATH SBGrid OPIG OpenTargets TCBG

Interactions & Reactions: Reactome RHEA STRING BRENDA IMEx

Expression: BioImage Expression (JAX) GTEx GXA GEO ProteomeXchange Human Protein Atlas RTI archs4

Genomes & Models: YeastGenome WormBase FlyBase ZFin GenCodes RatGenomeData Ensembl ClinGen

Other: GO KEGG MDDDB BioModels LipidMaps NeuroSnap

Health: USPSTF HealthCheckTools MyHealthFinder

Clinical Research: ResearchMatch HHS.Gov Open-Data AllOfUs UK BioBank BioBank Japan

Academia: AI Patient OpenEvidence OpenRead Copyright.com

To Edit the GitBook open this repo in an RStudio Posit Cloud directory, edit the .RMD files, compile & render the book using the native environment button, and Git push back to repo

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